DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chmp1 and CHMP1A

DIOPT Version :10

Sequence 1:NP_649051.3 Gene:Chmp1 / 40036 FlyBaseID:FBgn0036805 Length:203 Species:Drosophila melanogaster
Sequence 2:XP_054236410.1 Gene:CHMP1A / 5119 HGNCID:8740 Length:772 Species:Homo sapiens


Alignment Length:50 Identity:13/50 - (26%)
Similarity:17/50 - (34%) Gaps:7/50 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 QVADEAGLELNMELPSGVQSQSVGAST-------AVSQEQDELTQRLARL 199
            :.|.|||.|....|..|......|.|.       .|.:|:....:|...|
Human     6 EAAGEAGQEGGEGLQGGAGQSEEGPSAEKCRVCPCVCRERHPQEERRCEL 55

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chmp1NP_649051.3 Snf7 <42..172 CDD:460896 6/14 (43%)
CHMP1AXP_054236410.1 PHA03247 <87..627 CDD:223021
PHA03269 622..>729 CDD:165527
Blue background indicates that the domain is not in the aligned region.

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