DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment Chmp1 and chmp1b

DIOPT Version :9

Sequence 1:	NP_001287108.1	Gene:	Chmp1 / 40036	FlyBaseID:	FBgn0036805	Length:	203	Species:	Drosophila melanogaster
Sequence 2:	NP_001005047.1	Gene:	chmp1b / 448582	XenbaseID:	XB-GENE-5822036	Length:	199	Species:	Xenopus tropicalis

Alignment Length:	197	Identity:	146/197 - (74%)
Similarity:	167/197 - (84%)	Gaps:	2/197 - (1%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 SSMEKHLFNLKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAVNYL 68
            |||||:|||||||.|||.||:||||||||.||||.||||||||.::||||||||||||||.:|:|
Frog     2 SSMEKNLFNLKFAAKELHRNAKKCEKEEKTEKAKIKKAIQKGNTEIARIHAENAIRQKNQGINFL 66

  Fly    69 RMSARVDAVASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFEDLDVQSSV 133
            ||||||||||:|||:|:|..|||.|||||||:||..:|.|||||||:||:|||.|||.||||:..
Frog    67 RMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTTLKSMNLEKISALMDKFEHQFETLDVQTQQ 131

  Fly   134 MEGTMSDTVTTSVPQGDVDNLLQQVADEAGLELNMELPSGVQSQSVGASTAVSQEQDELTQRLAR 198
            ||.|||:|.|.:.||..|||||.::||||||:||||||.| |:.|||.|.| |.|||||:|||||
Frog   132 MEDTMSNTTTLTTPQNQVDNLLHEMADEAGLDLNMELPQG-QTGSVGTSVA-STEQDELSQRLAR 194

  Fly   199 LR 200
            ||
Frog   195 LR 196

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Chmp1	NP_001287108.1	Snf7	42..>167	CDD:419749	88/124 (71%)
chmp1b	NP_001005047.1	Snf7	43..>165	CDD:389827	85/121 (70%)
		Disordered. /evidence=ECO:0000256\|SAM:MobiDB-lite	167..199		23/32 (72%)
		MIT-interacting motif	186..196		8/9 (89%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	234	1.000	Domainoid score	I2335
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H22046
Inparanoid	1	1.050	276	1.000	Inparanoid score	I2881
OMA	1	1.010	-	-		QHG53616
OrthoDB	1	1.010	-	-		D1441797at2759
OrthoFinder	1	1.000	-	-		FOG0001910
OrthoInspector	1	1.000	-	-		oto104532
Panther	1	1.100	-	-	LDO	PTHR10476
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R315
SonicParanoid	1	1.000	-	-		X3097
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	12	12.110