DRSC/TRiP Functional Genomics Resources

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Protein Alignment Chmp1 and chmp2bb

DIOPT Version :9

Sequence 1:NP_001287108.1 Gene:Chmp1 / 40036 FlyBaseID:FBgn0036805 Length:203 Species:Drosophila melanogaster
Sequence 2:NP_998069.1 Gene:chmp2bb / 405840 ZFINID:ZDB-GENE-040426-2539 Length:214 Species:Danio rerio


Alignment Length:186 Identity:42/186 - (22%)
Similarity:93/186 - (50%) Gaps:3/186 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 LKFAVKELERNSKKCEKEEKLEKAKAKKAIQKGNMDVARIHAENAIRQKNQAVNYLRMSARVDAV 77
            |:...:::.|:....||:||..:.:.||..:.||.|..::.|:..::.:.|......:|::|.::
Zfish    21 LRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSM 85

  Fly    78 ASRVQSALTTRKVTGSMAGVVKAMDAAMKGMNLEKISSLMEKFESQFEDLDVQSSVMEGTMSDTV 142
            :::.:...:..|:.|:||...|.|.|..|.|:.:|....::.|:.:...:|:...:|..|:.:..
Zfish    86 STQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIF 150

  Fly   143 TTSVPQGDVDNLLQQVADEAGLELNMEL---PSGVQSQSVGASTAVSQEQDELTQR 195
            ..|..:.:..:::.||.||.|:|::.::   ||..:.....|:.......||..:|
Zfish   151 EDSGDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKADGISDEDIER 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Chmp1NP_001287108.1 Snf7 42..>167 CDD:419749 28/124 (23%)
chmp2bbNP_998069.1 Snf7 16..185 CDD:281366 38/163 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 178..199 3/20 (15%)
MIT-interacting motif 202..212 2/5 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5491
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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