DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and XTH30

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_174496.1 Gene:XTH30 / 840109 AraportID:AT1G32170 Length:343 Species:Arabidopsis thaliana


Alignment Length:299 Identity:64/299 - (21%)
Similarity:94/299 - (31%) Gaps:113/299 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 DGNLVIEPLLWSSYRPDLSIANSRLDLSERCTGTHNRIKECILHSTGSGPSGIMPPIVTPRISTK 279
            |.|||..|       .|||:   || |.:|.||                 ||.        ||:.
plant    42 DANLVRSP-------DDLSV---RL-LLDRYTG-----------------SGF--------ISSN 70

  Fly   280 ETFAFQYGRIEIRAKLPKGDWIVPLLLLEPLTEWYGQSGYESGQLRVALARGNSVLRMPRGKL-- 342
               .:|:|......|||                    :.|.:|.:.........|......:|  
plant    71 ---MYQHGFYSSMIKLP--------------------ADYTAGVVVAFYTSNGDVFEKTHDELDI 112

  Fly   343 -----VDGR------SLYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDG 396
                 :.|:      :|||.........:|..||....|      :||.||:.|:.::::|.||.
plant   113 EFLGNIKGKPWRFQTNLYGNGSTHRGREERYRLWFDPSK------EFHRYSILWTPHKIIFWVDD 171

  Fly   397 QVYGEMLNG--------------FTELDENPRWKQGG-------PMAPF---DKMFYISLGVSVG 437
            ....|::..              :..:.:...|...|       ..|||   .|.|.:. |.||.
plant   172 VPIREVIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSLD-GCSVD 235

  Fly   438 GF-------GDFVDHLRTATYEKPWANYHPQAKL-QFHQ 468
            ..       .|.||.|.:..|..  .|.|.:|.: :|.|
plant   236 PIQEVPMDCSDSVDFLESQDYSS--INSHQRAAMRRFRQ 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510
GH16_beta_GRP 175..491 CDD:185688 64/299 (21%)
XTH30NP_174496.1 GH16_XET 28..293 CDD:185685 64/299 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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