DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and XTH33

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_172525.1 Gene:XTH33 / 837596 AraportID:AT1G10550 Length:310 Species:Arabidopsis thaliana


Alignment Length:254 Identity:57/254 - (22%)
Similarity:83/254 - (32%) Gaps:83/254 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 FQYGRIEIRAKLPKGDWIVPLLLLEPLTEWYGQSGYESGQLRVALARGNSVLRMPRGKLVD---- 344
            :.||....|.|||                    :|:.||.: ||....|:.........:|    
plant    81 YHYGFFSARLKLP--------------------AGFASGVV-VAFYLSNAETYPKSHDEIDIELL 124

  Fly   345 GRSLYGGPVLSTDAHQREDLWLSKRKISHFGDD----FHTYSLDWSSNRLLFSVDGQVYGEMLN- 404
            |||......:.|:.:........:.:..:|..|    ||.|:|.|:|:..:|.||.....:..| 
plant   125 GRSRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNR 189

  Fly   405 -GFTE------------LDENPRWKQGGPMAPFD---KMFYISL------GVSVG-----GFG-- 440
             .||.            :.:...|...|...|.:   ..|.:|:      |.||.     |.|  
plant   190 GAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPC 254

  Fly   441 ----------DFVDHLRTATYEK------PWANYHPQAKLQFHQ-AQDQWLPTWK-QPA 481
                      |.||....||..|      .||    :.||.|:. ..|:  |.:| .||
plant   255 TKSGGSISSLDPVDGQDFATLSKNQINAMDWA----RRKLMFYSYCSDK--PRYKVMPA 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510
GH16_beta_GRP 175..491 CDD:185688 57/254 (22%)
XTH33NP_172525.1 PLN03161 38..309 CDD:178706 57/254 (22%)
GH16_XET 38..309 CDD:185685 57/254 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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