DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GNBP1 and XTH13

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_200562.1 Gene:XTH13 / 835858 AraportID:AT5G57540 Length:284 Species:Arabidopsis thaliana


Alignment Length:232 Identity:53/232 - (22%)
Similarity:84/232 - (36%) Gaps:82/232 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   231 DLSIANSRLDLSERCTGTHNRIKECILHS-TGSGPSGIMPPIVTPRISTKETFAFQYGRIEIRAK 294
            |::..|.|.::.|     ..::..|.|.. :|||            ..:|:.:.|  |:|:::.|
plant    31 DITWGNGRANIVE-----SGQLLTCTLDKISGSG------------FQSKKEYLF--GKIDMKMK 76

  Fly   295 LPKGD--WIVPLLLLEPLTEWYGQSGYESGQLRVALARGNSVLRMPRGKLVDGRSLYGGP-VLST 356
            |..|:  ..|....|....|.:.:..:|        ..||               :.|.| ||.|
plant    77 LVAGNSAGTVTAYYLSSKGETWDEIDFE--------FLGN---------------VTGQPYVLHT 118

  Fly   357 DAH-----QRE---DLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDG---QVY-GEMLNG---- 405
            :..     .||   .||.....      |||||::.|:...::|.|||   :|: ....||    
plant   119 NVFTGGKGNREMQFYLWFDPTA------DFHTYTVLWNPLNIIFLVDGIPIRVFKNNEANGVAYP 177

  Fly   406 -------FTELDENPRW-KQGGPM------APFDKMF 428
                   ::.|.|...| .|||.:      |||...:
plant   178 KSQPMKIYSSLWEADDWATQGGKVKTDWTNAPFSASY 214

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510
GH16_beta_GRP 175..491 CDD:185688 53/232 (23%)
XTH13NP_200562.1 GH16_XET 23..281 CDD:185685 53/232 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.