DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and XTH20

DIOPT Version :10

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_199618.1 Gene:XTH20 / 834859 AraportID:AT5G48070 Length:282 Species:Arabidopsis thaliana


Alignment Length:271 Identity:60/271 - (22%)
Similarity:87/271 - (32%) Gaps:114/271 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 KDAEFVLYDGKAKVHD--GNLVIEPLLWSSYRPDLSIANSRLDLSERCTGTHNRIKECILHSTGS 262
            ||.:....||:.|:.|  |||             ||::..:.                    :||
plant    31 KDVQIHWGDGRGKILDNVGNL-------------LSLSLDKF--------------------SGS 62

  Fly   263 GPSGIMPPIVTPRISTKETFAFQYGRIEIRAKLPKGD---WIVPLLLLEPLTEWYGQSGYESGQL 324
            |..           |.:|   |.||::|::.||..|:   .:....|..|.|.| .:..:|    
plant    63 GFQ-----------SHQE---FLYGKVEVQMKLVPGNSAGTVTTFYLKSPGTTW-DEIDFE---- 108

  Fly   325 RVALARGNSVLRMPRGKLVDGRSLYGGP-VLST--------DAHQREDLWLSKRKISHFGDDFHT 380
                ..||               :.|.| .|.|        |..|:..||.....      ||||
plant   109 ----FLGN---------------ISGHPYTLHTNVYTKGTGDKEQQFHLWFDPTV------DFHT 148

  Fly   381 YSLDWSSNRLLFSVDGQVYGEMLNG---------------FTELDENPRWKQGGPM-------AP 423
            |.:.|:..|::|::||....|..|.               :..|.|...|...|.:       ||
plant   149 YCIIWNPQRVIFTIDGIPIREFKNSEALGVPFPKHQPMRLYASLWEAEHWATRGGLEKTDWSKAP 213

  Fly   424 FDKMFYISLGV 434
            | ..||.:..|
plant   214 F-TAFYRNYNV 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..124 CDD:464924
GH16_beta_GRP 175..491 CDD:185688 60/271 (22%)
XTH20NP_199618.1 GH16_XET 25..281 CDD:185685 60/271 (22%)
Blue background indicates that the domain is not in the aligned region.

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