DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GNBP1 and XTH24

DIOPT Version :10

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_194756.1 Gene:XTH24 / 829150 AraportID:AT4G30270 Length:269 Species:Arabidopsis thaliana


Alignment Length:238 Identity:50/238 - (21%)
Similarity:84/238 - (35%) Gaps:71/238 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   259 STGSGPSGIMPPIVTPRISTKETFAFQYGRIEIRAKLPKGD---WIVPLLLLEPLTEW----YGQ 316
            |:|||            ..:|..:.|  |:|:::.||..|:   .:....|....:.|    :..
plant    53 SSGSG------------FQSKTEYLF--GKIDMQIKLVPGNSAGTVTTFYLKSEGSTWDEIDFEF 103

  Fly   317 SGYESGQLRVALARGNSVLRMPRGKLVDGRSLYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTY 381
            .|..||.   ......:|....:|                |..|:..||.....      :||||
plant   104 LGNMSGD---PYTLHTNVYTQGKG----------------DKEQQFHLWFDPTA------NFHTY 143

  Fly   382 SLDWSSNRLLFSVDGQVYGEMLNGFTELDENPRWKQGGPMAPFDK--MFYISL-----GVSVGGF 439
            |:.|:..|::.:||.          |.:.|...::..|.:.|.:|  ..|.||     ..:.||.
plant   144 SILWNPQRIILTVDD----------TPIREFKNYESLGVLFPKNKPMRMYASLWNADDWATRGGL 198

  Fly   440 -------GDFVDHLRTATYE-KPWANYHPQAKLQFHQAQDQWL 474
                   ..|:...|....: ||.:|::.|......||:.:|:
plant   199 VKTDWSKAPFMASYRNIKIDSKPNSNWYTQEMDSTSQARLKWV 241

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..124 CDD:464924
GH16_beta_GRP 175..491 CDD:185688 50/238 (21%)
XTH24NP_194756.1 GH16_XET 20..265 CDD:185685 50/238 (21%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.