DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and XTH9

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_192230.1 Gene:XTH9 / 828024 AraportID:AT4G03210 Length:290 Species:Arabidopsis thaliana


Alignment Length:234 Identity:49/234 - (20%)
Similarity:78/234 - (33%) Gaps:95/234 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 FQYGRIEIRAKLPKGDWIVPLLLLEPLTEWYGQS-GYESGQLRVALARGNSVLRMPRGKLVDGRS 347
            :.:|::.|:.||.:||      ....:|.:|..| |....:...... ||:.             
plant    67 YLFGKVSIQIKLVEGD------SAGTVTAFYMSSDGPNHNEFDFEFL-GNTT------------- 111

  Fly   348 LYGGP-VLSTDAH--------QREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDGQ------ 397
              |.| ::.|:.:        ||.:||....      .:|||||:.||...::|.||..      
plant   112 --GEPYIVQTNIYVNGVGNREQRLNLWFDPT------TEFHTYSILWSKRSVVFMVDETPIRVQK 168

  Fly   398 ----------------VYGEMLNGFTELDENPRW-KQGGPM------APFDKMFYISLGVSVGGF 439
                            ||..:.|.    |:   | .|||.:      |||           |..:
plant   169 NLEEKGIPFAKDQAMGVYSSIWNA----DD---WATQGGLVKTDWSHAPF-----------VASY 215

  Fly   440 GDF-VDHLRTATY---------EKPWANYHPQAKLQFHQ 468
            .:| :|.....|.         :|.|.:....::|..||
plant   216 KEFQIDACEIPTTTDLSKCNGDQKFWWDEPTVSELSLHQ 254

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510
GH16_beta_GRP 175..491 CDD:185688 49/234 (21%)
XTH9NP_192230.1 GH16_XET 25..284 CDD:185685 49/234 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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