DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment GNBP1 and XTH15

DIOPT Version :9

Sequence 1:	NP_524142.2	Gene:	GNBP1 / 40034	FlyBaseID:	FBgn0040323	Length:	492	Species:	Drosophila melanogaster
Sequence 2:	NP_193149.2	Gene:	XTH15 / 827051	AraportID:	AT4G14130	Length:	289	Species:	Arabidopsis thaliana

Alignment Length:	279	Identity:	54/279 - (19%)
Similarity:	87/279 - (31%)	Gaps:	116/279 - (41%)

- Green bases have known domain annotations that are detailed below.

  Fly   223 LLWSSYRPDLSIANSRLDLSERCTGTHNRIKECILHSTGSGPSGIMPPIVTPRISTKETFAFQYG 287
            |.|..:|..:....:.|.||             :...:|||            ..:|:.:.|  |
plant    34 LTWGDHRGKIFNGGNMLSLS-------------LDQVSGSG------------FKSKKEYLF--G 71

  Fly   288 RIEIRAKLPKGDWIVPLLLLEPLTEWYGQS-------------GYESGQLRVALARGNSVLRMPR 339
            ||:::.||..|:      ....:|.:|..|             |.|:|:..|.   ..:|....:
plant    72 RIDMQLKLVAGN------SAGTVTAYYLSSQGATHDEIDFEFLGNETGKPYVL---HTNVFAQGK 127

  Fly   340 GKLVDGRSLYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDG-------- 396
            |                |..|:..||....|      :|||||:.|....::|.||.
plant   128 G----------------DREQQFYLWFDPTK------NFHTYSIVWRPQHIIFLVDNLPIRVFNN 170

  Fly   397 --------------QVYGEMLN--------GFTELDENPRWKQGGPMAPFDKMFYISLGVSVGG- 438
                          ::|..:.|        |..:.|    |.: .|...:.:.|..:...:..|
plant   171 AEKLGVPFPKSQPMRIYSSLWNADDWATRGGLVKTD----WSK-APFTAYYRGFNAAACTASSGC 230

  Fly   439 -------FGDFVDHLRTAT 450
                   |||  ..|:.||
plant   231 DPKFKSSFGD--GKLQVAT 247

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
GNBP1	NP_524142.2	CBM39	21..126	CDD:292510
GNBP1	NP_524142.2	GH16_beta_GRP	175..491	CDD:185688	54/279 (19%)
XTH15	NP_193149.2	GH16_XET	23..284	CDD:185685	54/279 (19%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1209387at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010