DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and XTH2

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_193045.1 Gene:XTH2 / 826923 AraportID:AT4G13090 Length:292 Species:Arabidopsis thaliana


Alignment Length:261 Identity:54/261 - (20%)
Similarity:80/261 - (30%) Gaps:105/261 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 NRIKECIL---HSTGSGPSGIMPPIVTPRISTKETFAFQYGRIEIRAKLPKGD--WIVPLLLLEP 309
            |:.||..|   :|:|||            ..:|..:.  .|..::|.|||..|  .:|....|..
plant    49 NQGKEVQLSMDYSSGSG------------FESKSHYG--SGFFQMRIKLPPRDSAGVVTAFYLTS 99

  Fly   310 LTEWYGQSGYESGQLRVALARGNSVLRMPRGKLVDGRSLYGGPVLSTDAHQREDL---WLSKRKI 371
            ..:.:.:..:|        ..||.     :||.:..::    .|.|.....||..   |....  
plant   100 KGDTHDEVDFE--------FLGNR-----QGKPIAIQT----NVFSNGQGGREQKFVPWFDPT-- 145

  Fly   372 SHFGDDFHTYSLDWSSNRLLFSVDG---------------------QVYGEMLNGFTELDENPRW 415
                ..||||.:.|:..:::|.||.                     |:...:.||     ||  |
plant   146 ----TSFHTYGILWNPYQIVFYVDKVPIRVFKNIKKSGVNYPSKPMQLVASLWNG-----EN--W 199

  Fly   416 KQGG-------PMAPFDKMFYISLGVSVGGFGDFVDHL-----------------RTATYEKPWA 456
            ...|       ..|||...:.        ||.|...|:                 .|.||.:..|
plant   200 ATSGGKEKINWAYAPFKAQYQ--------GFSDHGCHVNGQSNNANVCGSTRYWWNTRTYSQLSA 256

  Fly   457 N 457
            |
plant   257 N 257

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510
GH16_beta_GRP 175..491 CDD:185688 54/261 (21%)
XTH2NP_193045.1 GH16_XET 27..288 CDD:185685 54/261 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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