DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment GNBP1 and XTH16

DIOPT Version :9

Sequence 1:	NP_524142.2	Gene:	GNBP1 / 40034	FlyBaseID:	FBgn0040323	Length:	492	Species:	Drosophila melanogaster
Sequence 2:	NP_566738.1	Gene:	XTH16 / 821955	AraportID:	AT3G23730	Length:	291	Species:	Arabidopsis thaliana

Alignment Length:	302	Identity:	58/302 - (19%)
Similarity:	88/302 - (29%)	Gaps:	140/302 - (46%)

- Green bases have known domain annotations that are detailed below.

  Fly   223 LLWSSYRPDLSIANSRLDLS-ERCTGTHNRIKECILHSTGSGPSGIMPPIVTPRISTKETFAFQY 286
            |.|..:|..:......|.|| :|.:|                 ||..        |.||   :.:
plant    33 LTWGEHRGKIFSGGKMLSLSLDRVSG-----------------SGFK--------SKKE---YLF 69

  Fly   287 GRIEIRAKLPKGDWIVPLLLLEPLTEWYGQS-------------GYESGQLRV------ALARGN 332
            |||:::.||..|:      ....:|.:|..|             |.|:|:..|      |..:||
plant    70 GRIDMQLKLVAGN------SAGTVTAYYLSSEGPTHDEIDFEFLGNETGKPYVLHTNVFAQGKGN 128

  Fly   333 SVLRMPRGKLVDGRSLYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDG- 396
                                     ..|:..||....|      :||||||.|....::|.||.
plant   129 -------------------------REQQFYLWFDPTK------NFHTYSLVWRPQHIIFMVDNV 162

  Fly   397 ---------------------QVYGEMLN--------GFTELDENPRWKQGGPMAPFDKMF--YI 430
                                 ::|..:.|        |..:.|    |.:    |||...:  :.
plant   163 PIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTD----WSK----APFTAYYRGFN 219

  Fly   431 SLGVSVGGFGDFVDHLRTATYEKPWANYHPQAKLQFHQAQDQ 472
            :...:|.....|.|               |:.|..|...:.|
plant   220 AAACTVSSGSSFCD---------------PKFKSSFTNGESQ 246

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
GNBP1	NP_524142.2	CBM39	21..126	CDD:292510
GNBP1	NP_524142.2	GH16_beta_GRP	175..491	CDD:185688	58/302 (19%)
XTH16	NP_566738.1	GH16_XET	24..286	CDD:185685	58/302 (19%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1209387at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.010