DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and XTH4

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_178708.1 Gene:XTH4 / 815247 AraportID:AT2G06850 Length:296 Species:Arabidopsis thaliana


Alignment Length:212 Identity:45/212 - (21%)
Similarity:71/212 - (33%) Gaps:50/212 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   283 AFQYGRIEIRAKLPKGD--WIVPLLLLEPLTEWYGQSGYESGQLRVALARGNSVLRMPRGKLVDG 345
            ::.:|...:..|||.||  .:|....|......:.:..:|        ..||   |..:..::..
plant    74 SYLFGHFSMHIKLPAGDTAGVVTAFYLSSTNNEHDEIDFE--------FLGN---RTGQPAILQT 127

  Fly   346 RSLYGGPVLSTDAHQREDLWLSKRKISHFGDDFHTYSLDWSSNRLLFSVDGQVYGEMLNGFTELD 410
            ....||   ..:..||..||....|.      :||||:.|:..:::|.||........|.   .|
plant   128 NVFTGG---KGNREQRIYLWFDPSKA------YHTYSILWNMYQIVFFVDNIPIRTFKNA---KD 180

  Fly   411 ENPRWKQGGPMAPFDKMFYISLGVSVGGFGDFVDHLRTATYEKP-WAN---------YH---PQA 462
            ...|:....||..:..::......:.||.            ||. |||         :|   .||
plant   181 LGVRFPFNQPMKLYSSLWNADDWATRGGL------------EKTNWANAPFVASYKGFHIDGCQA 233

  Fly   463 KLQFHQAQDQWLPTWKQ 479
            .::......|....|.|
plant   234 SVEAKYCATQGRMWWDQ 250

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510
GH16_beta_GRP 175..491 CDD:185688 45/212 (21%)
XTH4NP_178708.1 GH16_XET 30..290 CDD:185685 45/212 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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