DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and CG30148

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_001286634.1 Gene:CG30148 / 37318 FlyBaseID:FBgn0050148 Length:124 Species:Drosophila melanogaster


Alignment Length:113 Identity:41/113 - (36%)
Similarity:55/113 - (48%) Gaps:12/113 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPGLCIGILLL---IGFGCTTAYKIPTPTVELL-ETGFSVSIPDEEGVKVVAFNVNRNRNFTSFI 61
            ||.|.:.:|||   |.||  .||:.|...|.:. ..||.|||||.||:.:.||:...|..|.. :
  Fly     1 MPTLPLCLLLLVLAIAFG--HAYEAPEAQVRVFYPRGFEVSIPDAEGISLFAFHGKLNEEFDG-L 62

  Fly    62 NEGQYNVRLTEPQNGRWTTNFSSVPLRSQDVLYLWTSVQHQKAVYQDL 109
            ..||::..:.:.:.||||.......|...|.||.||.|     :|..|
  Fly    63 EAGQWSRDIPKAKRGRWTFRDHKTKLNHGDTLYFWTYV-----IYNGL 105

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510 30/90 (33%)
GH16_beta_GRP 175..491 CDD:185688
CG30148NP_001286634.1 CBM39 24..124 CDD:292510 30/88 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464986
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D105633at50557
OrthoFinder 1 1.000 - - FOG0006727
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.850

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