DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and CG30148

DIOPT Version :10

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_665889.1 Gene:CG30148 / 37318 FlyBaseID:FBgn0050148 Length:124 Species:Drosophila melanogaster


Alignment Length:111 Identity:40/111 - (36%)
Similarity:55/111 - (49%) Gaps:7/111 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPGLCIGILLL---IGFGCTTAYKIPTPTVELL-ETGFSVSIPDEEGVKVVAFNVNRNRNFTSFI 61
            ||.|.:.:|||   |.||  .||:.|...|.:. ..||.|||||.||:.:.||:...|..|.. :
  Fly     1 MPTLPLCLLLLVLAIAFG--HAYEAPEAQVRVFYPRGFEVSIPDAEGISLFAFHGKLNEEFDG-L 62

  Fly    62 NEGQYNVRLTEPQNGRWTTNFSSVPLRSQDVLYLWTSVQHQKAVYQ 107
            ..||::..:.:.:.||||.......|...|.||.||.|.:....|:
  Fly    63 EAGQWSRDIPKAKRGRWTFRDHKTKLNHGDTLYFWTYVIYNGLGYR 108

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..124 CDD:464924 29/88 (33%)
GH16_beta_GRP 175..491 CDD:185688
CG30148NP_665889.1 CBM39 24..124 CDD:464924 29/86 (34%)
Blue background indicates that the domain is not in the aligned region.

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