DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP1 and C40A11.8

DIOPT Version :9

Sequence 1:NP_524142.2 Gene:GNBP1 / 40034 FlyBaseID:FBgn0040323 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_001367613.1 Gene:C40A11.8 / 183356 WormBaseID:WBGene00016551 Length:127 Species:Caenorhabditis elegans


Alignment Length:40 Identity:11/40 - (27%)
Similarity:15/40 - (37%) Gaps:8/40 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPGLCIGILLLIGFGCTTAYKIPTPTVELLETGFSVSIPD 40
            :|.:.|..:.||...|...|.        .|..||..:||
 Worm    69 LPIINILSIPLIYVACLAYYS--------EEVAFSEMVPD 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP1NP_524142.2 CBM39 21..126 CDD:292510 5/20 (25%)
GH16_beta_GRP 175..491 CDD:185688
C40A11.8NP_001367613.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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