DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GNBP2 and XTH19

DIOPT Version :10

Sequence 1:NP_524141.1 Gene:GNBP2 / 40033 FlyBaseID:FBgn0040322 Length:461 Species:Drosophila melanogaster
Sequence 2:NP_194758.1 Gene:XTH19 / 829152 AraportID:AT4G30290 Length:277 Species:Arabidopsis thaliana


Alignment Length:259 Identity:53/259 - (20%)
Similarity:90/259 - (34%) Gaps:75/259 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   196 LVAFDDAARNCFVKEGELHIVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHGIFYSIKPPVFS 260
            |:.|..||::..|..|..|  ..:.....||..|:.|....:.|...:.:...|.          
plant     7 LILFLFAAQSISVYAGSFH--KDVKIHWGDGRGKIHDNQGKLLSLSLDKSSGSGF---------- 59

  Fly   261 AQIHTRNSFSFKFGKIVVRAKLPKGD---WLFPYLMLQPVSTYAETHYAKQLRIA---YARGNAN 319
                 :::..|.:||..|:.||..|:   .:..:.:..|.:|:.|..:.....|:   |.. :.|
plant    60 -----QSNQEFLYGKAEVQMKLVPGNSAGTVTTFYLKSPGTTWDEIDFEFLGNISGHPYTL-HTN 118

  Fly   320 LRTK-QGDDISGNHLYGGGVVWHHGNAVQFLKDKISNSHYGDDFHNYTMIWQRDKITLMVDDEVY 383
            :.|| .||.....||      |....|               :||.|.:.|...:|...||    
plant   119 VYTKGSGDKEQQFHL------WFDPTA---------------NFHTYCITWNPQRIIFTVD---- 158

  Fly   384 GELYDGLPFFNEKCFIIFGVTVGGFLNFDDSLLAKDVKPYKNREP-RAALSFWQHRDAWAPTWG 446
                              |:.:..|:|.:    ::.| |:..::| |...|.|: .:.||...|
plant   159 ------------------GIPIREFMNAE----SRGV-PFPTKQPMRLYASLWE-AEHWATRGG 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP2NP_524141.1 CBM39 22..120 CDD:464924
GH16_beta_GRP 165..460 CDD:185688 53/259 (20%)
XTH19NP_194758.1 GH16_XET 20..276 CDD:185685 48/246 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.