DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GNBP2 and XTH16

DIOPT Version :10

Sequence 1:NP_524141.1 Gene:GNBP2 / 40033 FlyBaseID:FBgn0040322 Length:461 Species:Drosophila melanogaster
Sequence 2:NP_566738.1 Gene:XTH16 / 821955 AraportID:AT3G23730 Length:291 Species:Arabidopsis thaliana


Alignment Length:321 Identity:63/321 - (19%)
Similarity:100/321 - (31%) Gaps:143/321 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 IVPTIATEVTDGSFKLGDRCTAVESPEQECNIAHG-----IFYSIKPPVFSAQIHTRNSFSFK-- 272
            :|.|:|.....|||            .:|.::..|     ||...|  :.|..:...:...||  
plant    14 LVVTMAGTAFSGSF------------NEEFDLTWGEHRGKIFSGGK--MLSLSLDRVSGSGFKSK 64

  Fly   273 ----FGKIVVRAKLPKGD---WLFPYLMLQPVSTYAETH---------------YAKQLRIAYAR 315
                ||:|.::.||..|:   .:..|.:    |:...||               |.....: :|:
plant    65 KEYLFGRIDMQLKLVAGNSAGTVTAYYL----SSEGPTHDEIDFEFLGNETGKPYVLHTNV-FAQ 124

  Fly   316 GNANLRTKQGDDISGNHLYGGGVVWHHGNAVQFLKDKISNSHYGDDFHNYTMIWQRDKITLMVDD 380
            |..| |.:|        .|    :|.         |...|      ||.|:::|:...|..|||:
plant   125 GKGN-REQQ--------FY----LWF---------DPTKN------FHTYSLVWRPQHIIFMVDN 161

  Fly   381 ----------------------EVYGELYD--------GL--------PF------FN-EKCFII 400
                                  ::|..|::        ||        ||      || ..|.:.
plant   162 VPIRVFNNAEQLGVPFPKNQPMKIYSSLWNADDWATRGGLVKTDWSKAPFTAYYRGFNAAACTVS 226

  Fly   401 FGVTV------GGFLNFDDSLLAKDVKPYKNREPRAALSFWQHRDAWAPTWGRHSAMVIDY 455
            .|.:.      ..|.| .:|.:|.::..|..|..|               |.:...|:.||
plant   227 SGSSFCDPKFKSSFTN-GESQVANELNAYGRRRLR---------------WVQKYFMIYDY 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP2NP_524141.1 CBM39 22..120 CDD:464924
GH16_beta_GRP 165..460 CDD:185688 63/321 (20%)
XTH16NP_566738.1 GH16_XET 24..286 CDD:185685 60/311 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.