DRSC/TRiP Functional Genomics Resources

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Protein Alignment not and UBP12

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_012338.1 Gene:UBP12 / 853242 SGDID:S000003733 Length:1254 Species:Saccharomyces cerevisiae


Alignment Length:756 Identity:120/756 - (15%)
Similarity:181/756 - (23%) Gaps:424/756 - (56%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GLRGLLNLGATCFMNCIVQALVHTPLLSDYFMSDRHDCGSKSS-----HKCLVCEVSRLFQEFYS 215
            |..||:|||.||:||..:|.|||.|.|.|||:.|.::......     |..:....|.|.|:.:.
Yeast   362 GTTGLVNLGNTCYMNSALQCLVHIPQLRDYFLYDGYEDEINEENPLGYHGYVARAFSDLVQKLFQ 426

  Fly   216 GSRS--------PLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEHESKSN 272
            ...|        |.|:.:  ..|.:.....:||.|||:.||....||.||....:...:..::..
Yeast   427 NRMSIMQRNAAFPPSMFK--STIGHFNSMFSGYMQQDSQEFLAFLLDSLHEDLNRIIKKEYTEKP 489

  Fly   273 SSGSGSGTNSSN--------SSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPF---- 325
            |...|...|..|        :...|....|:.|.| :|.||.:|.:.|..|..||.|:||:    
Yeast   490 SLSPGDDVNDWNVVKKLADDTWEMHLKRNCSVITD-LFVGMYKSTLYCPECQNVSITFDPYNDVT 553

  Fly   326 --------WD--------------ISLDLGETTTH----------GGVTPKTLI----------- 347
                    ||              :.::|.:::|:          .|:.|.||.           
Yeast   554 LPLPVDTVWDKTIKIFPMNSPPLLLEVELSKSSTYMDLKNYVGKMSGLDPNTLFGCEIFSNQIYV 618

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Yeast   619 NYESTESNAQFLTLQELIKPADDVIFYELPVTNDNEVIVPVLNTRIEKGYKNAMLFGVPFFITLK 683

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Yeast   684 EDELNNPGAIRMKLQNRFVHLSGGYIPFPEPVGNRTDFADAFPLLVEKYPDVEFEQYKDILQYTS 748

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Yeast   749 IKVTDKDKSFFSIKILSVEKEQQFASNNRTGPNFWTPISQLNLDKATDIDDKLEDVVKDIYNYSS 813

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Yeast   814 LVDCAEGVLMQVDDEGDTEGSEAKNFSKPFQSGDDEENKETVTNNENVNNTNDRDEDMELTDDVE 878

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Yeast   879 EDASTEPELTDKPEALDKIKDSLTSTPFAILSMNDIIVCEWSELGSNEAFSDDKIYNWENPATLP 943

  Fly   348 ----------------------DCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVS 390
                                  |||:.:::.|.||......|.|||.::::|||..|...|.::.
Yeast   944 NKELENAKLERSNAKERTITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILL 1008

  Fly   391 FHLKRFEHSALIDRKISSFIQFPV-EFDMTPFMSEKKNAYGDFRFSLYAVVNHVGTIDTGHYTAY 454
            .||||||.......||.:.:.||: :.|::.::..|.:..| ..:.||||.||.|.:..||||||
Yeast  1009 IHLKRFESQRSFSDKIDATVNFPITDLDLSRYVVYKDDPRG-LIYDLYAVDNHYGGLGGGHYTAY 1072

  Fly   455 VRHQKDT-WVKCDDHVITMASLKQVLDSEGYLLFY---HKN 491
            |::..|. |...||..:|..:.:..:....|||||   ||:
Yeast  1073 VKNFADNKWYYFDDSRVTETAPENSIAGSAYLLFYIRRHKD 1113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999
Peptidase_C19D 158..489 CDD:239125 117/750 (16%)
UBP12NP_012338.1 UBP12 99..1111 CDD:227847 118/752 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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