DRSC/TRiP Functional Genomics Resources

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Protein Alignment not and Usp8

DIOPT Version :10

Sequence 1:NP_001401041.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001239509.1 Gene:Usp8 / 84092 MGIID:1934029 Length:1091 Species:Mus musculus


Alignment Length:419 Identity:122/419 - (29%)
Similarity:193/419 - (46%) Gaps:53/419 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 RSREYALINRKLEAKDLQKSI-----------------GWVPWVPTTKETNLLLANARRRLVRPN 359
            |.||.:.:.|...:.|:.:::                 ...|..|.. |.:.|.|:..|.|   |
Mouse   679 RDREPSKLKRSYSSPDITQALQEEEKRRPAVTPMVNRENKPPCYPKA-EISRLSASQIRNL---N 739

  Fly   360 QTIG-----LRGLLNLGATCFMNCIVQALVHTPLLSDYF----MSDRHDCGSKSSHKCLVC-EVS 414
            ...|     |.||.|||.||:||.|:|.|.:.|.|:|||    ..|..:..:...||..|. |..
Mouse   740 PVFGGSGPALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFG 804

  Fly   415 RLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKA--KAEHESK 477
            .:.:..::|....:|.......|.......||..|||:.|..:..:|.||....||  :..|:.:
Mouse   805 IIMKALWTGQYRYISPKDFKVTIGKINDQFAGSSQQDSQELLLFLMDGLHEDLNKADNRKRHKEE 869

  Fly   478 SNSSGSGSGTNSSNSSSSHC---YGQCN-CIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLD 538
            :|..      .....::.|.   :.|.| .||..:|.|..:|.|.|..|...|.|::.|..:||.
Mouse   870 NNEH------LDDLQAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCRRRSRTFEAFMYLSLP 928

  Fly   539 LGETTTHGGVTPKTLIDCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRF 603
            |..|      :..||.|||..:::.|.|....:..||.|::.::|.|:..:..||.|:..|||||
Mouse   929 LAST------SKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRF 987

  Fly   604 EHSALIDRKISSFIQFPVE-FDMTPFMSEKKNAYGDFRFSLYAVVNHVGTIDTGHYTAYVRH-QK 666
            .:.....:|:.:.:.||:| .|::.::...||:..  :::|::|.||.|.:|.||||||.:: .:
Mouse   988 SYDGRWKQKLQTSVDFPLENLDLSQYVIGPKNSLK--KYNLFSVSNHYGGLDGGHYTAYCKNAAR 1050

  Fly   667 DTWVKCDDHVITMASLKQVLDSEGYLLFY 695
            ..|.|.|||.::..|:..|..|..|:|||
Mouse  1051 QRWFKFDDHEVSDISVSSVRSSAAYILFY 1079

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001401041.1 zf-UBP 253..310 CDD:460464
Peptidase_C19D 365..696 CDD:239125 107/344 (31%)
Usp8NP_001239509.1 USP8_dimer 6..127 CDD:462647
Radial_spoke_3 <91..>171 CDD:461827
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 130..187
Rhodanese 204..315 CDD:425764
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 390..466
SH3-binding 416..424
PTZ00121 <464..589 CDD:173412
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 479..616
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 653..721 5/41 (12%)
UCH 750..1079 CDD:425685 105/342 (31%)
Blue background indicates that the domain is not in the aligned region.

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