DRSC/TRiP Functional Genomics Resources

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Protein Alignment not and usp30

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001039085.1 Gene:usp30 / 733894 XenbaseID:XB-GENE-981069 Length:519 Species:Xenopus tropicalis


Alignment Length:481 Identity:110/481 - (22%)
Similarity:164/481 - (34%) Gaps:161/481 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 WVPWVPTTKETNLLLANARRRLVRPNQTIGLRGLLNLGATCFMNCIVQALVHTP----LLSDYFM 187
            :|.|.|.:.....     |:.||        .||||||.|||||.::|.|...|    .|:|:..
 Frog    67 YVLWGPISDRKKY-----RKGLV--------PGLLNLGNTCFMNSLLQGLASCPSFIRWLADFTS 118

  Fly   188 SDRHDCGSKSSHKCLVCEVSRLFQEF--YSGSRSP-LSLHRLLHLIWNHAKHLAGYEQQDAHEFF 249
            ..|.: .:.:.|:.|...:..|.:..  ..|:... |....||.::..|...::.:|:|||||.|
 Frog   119 KYRQE-NNTTEHQHLSVTLLHLLKALCNQEGTEDEVLDASPLLEVLRAHRWQISSFEEQDAHELF 182

  Fly   250 IATLDVLHRHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYG------------QCNC------ 296
                     |.:.:..|.|            .......:|.:.            |.:|      
 Frog   183 ---------HVLTSSLEDE------------RDRRPHVTHLFDLDSLEFPLEPQRQIHCRTQVPI 226

  Fly   297 --IIDQ-----IFTGMLQSDVVCQACNGVS-TTYDPFWDISLDLGETTTHGGVTPKTLIDCLERY 353
              |..|     .|.|.|.|::||:.|...| ..||.|..:||.: ...|.|  .|.||..||:.:
 Frog   227 YPIPSQWKSQHPFHGRLTSNMVCKHCQHQSPMRYDTFDSLSLSI-PVATWG--HPITLDQCLQHF 288

  Fly   354 TRAEHLGSAAKIKCSTCKSYQES---------------TKQFSLRTLPSVVSFHLKR-------- 395
            ...|   |...:.|..|.....:               .||..|..||..:..||:|        
 Frog   289 ISTE---SVKDVVCENCTKIHAAQIPNSQSVENRKTTFVKQLKLGKLPQCLCIHLQRLSWSNQGS 350

  Fly   396 ---------FEHSALIDR---KIS----------------------------------------- 407
                     |.....:||   :||                                         
 Frog   351 PLKRNEHVQFSEFLAMDRFKYRISGCSTSKQPANHLSAAEQETTDGKEGGAQNPTMPFLNGACST 415

  Fly   408 SFIQFPVEFDMTPFMSEKKNAYGDFRFSLYAVVNHVGTIDTGHYTAY-----VRHQKDT---WVK 464
            |:|..|.   .:|..:..:.....:.|.|.|||.|.|.:.:||:..|     .::||.|   |:.
 Frog   416 SYISPPF---TSPLPTNPEWTSSSYLFRLMAVVVHHGDMHSGHFVTYRRSPAAKNQKLTSQQWLW 477

  Fly   465 CDDHVITMASLKQVLDSEGYLLFYHK 490
            ..|..:...:.::||.|..|||||.:
 Frog   478 ISDDTVRRTNFQEVLSSSAYLLFYER 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999
Peptidase_C19D 158..489 CDD:239125 103/447 (23%)
usp30NP_001039085.1 Peptidase_C19F 86..502 CDD:239127 103/446 (23%)
UCH 86..501 CDD:278850 102/445 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 379..405 0/25 (0%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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