DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and usp3

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001186800.1 Gene:usp3 / 569679 ZFINID:ZDB-GENE-030131-5142 Length:524 Species:Danio rerio


Alignment Length:521 Identity:159/521 - (30%)
Similarity:233/521 - (44%) Gaps:96/521 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 HYQSYVKEHSYDTFRVIDAYFAACVNR-----DARERKAIHCNCFECGSYGIQLYACLHCIYFGC 67
            |...||..|:...|..|:|  ..|..|     ..||:...|..|.:|.||....|.|...:....
Zfish    48 HCGRYVNGHAKKHFEEIEA--PGCSQRKPDREKLREKGQQHSVCMDCNSYSTFCYKCDEFVVNDT 110

  Fly    68 RGAHITSHLRSKKHNVALELSHGTLYCYACRDFIYDARSREYALINRKL------EAKDLQKSIG 126
            :..|:.   |.::|..:||.|       .|.    ..|.|:     ||:      ::|..|.|.|
Zfish   111 KLGHVQ---RVREHLQSLENS-------VCN----TDRQRK-----RKMSESFSPDSKMKQDSEG 156

  Fly   127 WVPWVPTTKETNLLLANARRRLVRPNQTIGLRGLLNLGATCFMNCIVQALVHTPLLSDYF----- 186
            .:....|                         ||.|||.|||||.|:|:|.:..:.|.||     
Zfish   157 ALVQCAT-------------------------GLRNLGNTCFMNAILQSLSNIQVFSCYFKELPS 196

  Fly   187 --MSDRHDCGSKSSHK--------CLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYE 241
              :......|.:..|.        .||.|..:.....:.||::..|...|.::||.......||:
Zfish   197 VALRSGKTAGRRMYHTRSQGDSSVSLVEEFRKTLCSLWQGSQTAFSPDALFYVIWKIMPSFRGYQ 261

  Fly   242 QQDAHEFFIATLDVLHRHCVKAKAEHESKSNSSGSGS----GTNSSNSSSSHCY-GQCNCIIDQI 301
            |||||||....||.|||         |.:.|.:||.|    ....:::|.|.|: ...:.|:..:
Zfish   262 QQDAHEFLRYLLDHLHR---------EMQGNKNGSPSPPVTSDEPNHASESKCFINGTSTIVTSV 317

  Fly   302 FTGMLQSDVVCQACNGVSTTYDPFWDISLDLG-----ETTTHGGVTPK-TLIDCLERYTRAEHLG 360
            |.|:||::|.|..|...|..:|||.|:|||:.     :||......|. ||.|||..:|..|.|.
Zfish   318 FGGVLQNEVYCLICGTESRKFDPFLDLSLDIPNQFRIKTTKDQEPGPTCTLSDCLRSFTDLEELD 382

  Fly   361 SAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPV-EFDMTPFMSE 424
            ......|..||..|:|||:|.::.||.|:..|||||..:|.:..|:.::::||: ..||..::.|
Zfish   383 ETELYMCHKCKKRQKSTKKFWIQKLPKVLCLHLKRFHWTAFLRNKVDTYVEFPMCGLDMKSYLLE 447

  Fly   425 KKNAYGD-FRFSLYAVVNHVGT-IDTGHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLF 487
            .:|:..: ..:.|.|||.|.|: |.:||||||.||: ..|...:|..:|:.|.:.||.::.|:||
Zfish   448 PENSLPERCLYDLAAVVVHHGSGIGSGHYTAYGRHE-GQWYHFNDSTVTLVSEEAVLKAKAYILF 511

  Fly   488 Y 488
            |
Zfish   512 Y 512

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999 13/56 (23%)
Peptidase_C19D 158..489 CDD:239125 125/360 (35%)
usp3NP_001186800.1 zf-UBP 29..109 CDD:280334 18/62 (29%)
UCH 162..512 CDD:278850 124/384 (32%)
Peptidase_C19 164..513 CDD:271592 125/359 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D929408at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.