DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and Usp24

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_006503239.1 Gene:Usp24 / 329908 MGIID:1919936 Length:2637 Species:Mus musculus


Alignment Length:463 Identity:104/463 - (22%)
Similarity:166/463 - (35%) Gaps:120/463 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 LYCYACRDFIYDARSREYALINRKLEAKDLQKSIGWVPWVPTTKETNLLLANARRRLVRPNQTIG 156
            |..|.....:.|:......:|.::|.:...|      |....|||.:.|..      |....:.|
Mouse  1652 LAAYEVLVMLADSSPSNLQIITKELLSMHHQ------PDPALTKEFDYLPP------VDSRSSSG 1704

  Fly   157 LRGLLNLGATCFMNCIVQALVHTPLLSDYFMSDRHDCGSKSSHKCLVCEVSRLFQEFYSGSRS-- 219
            ..||.|.||||:||.:.|.|...|.|.:..:|...|  :.:....:..:|..||.........  
Mouse  1705 FVGLRNGGATCYMNAVFQQLYMQPGLPESLLSVDDD--TDNPDDSVFYQVQSLFGHLMESKLQYY 1767

  Fly   220 -PLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEHESKSNSSGSGSGTNSS 283
             |.:..::..: ||  |.|...|||||:|||.:.:|.:..:..|...|.                
Mouse  1768 VPENFWKIFKM-WN--KELYVREQQDAYEFFTSLIDQMDEYLKKMGREQ---------------- 1813

  Fly   284 NSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLGETTTHGGVTPKTLID 348
                         |....|.|:.....:|:.|.......:.|  ::|:||.|:.      ::|..
Mouse  1814 -------------IFKNTFQGIYSDQKICKDCPHRYEREEAF--MALNLGVTSC------QSLEI 1857

  Fly   349 CLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRF----EHSALIDRKISSF 409
            .|:::.|.|.|..:....|..||..:.:.|:..:::||||:..||.||    |....|  |....
Mouse  1858 SLDQFVRGEVLEGSNAYYCEKCKEKRITVKRTCIKSLPSVLVIHLMRFGFDWESGRSI--KYDEQ 1920

  Fly   410 IQFPVEFDMTPFM--------------------------SEKKNAYGDFRFSLYAVVNHVGTIDT 448
            |:||...:|.|:.                          |.:|.......:.|..|:.|.|....
Mouse  1921 IRFPWMLNMEPYTVAGMARQDSSSEVGENGRNMDQGGGGSPRKKVALTENYELVGVIVHSGQAHA 1985

  Fly   449 GHYTAYVRHQ----KDTWVKCDDHVITMASLK-QVLDSE-------------------------- 482
            |||.::::.:    |..|.|.:|.||....|. :.|:.|                          
Mouse  1986 GHYYSFIKDRRGCGKGKWYKFNDTVIEEFDLNDETLEYECFGGEYRPKVYDQTNPYTDVRRRYWN 2050

  Fly   483 GYLLFYHK 490
            .|:|||.:
Mouse  2051 AYMLFYQR 2058

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999 2/10 (20%)
Peptidase_C19D 158..489 CDD:239125 90/394 (23%)
Usp24XP_006503239.1 UBA_UBP24 6..42 CDD:270472
Ubl_UBP24 972..1050 CDD:340585
peptidase_C19C 1704..2061 CDD:239124 92/399 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.