Protein Alignment not and Usp39

DIOPT Version :10

• Sequence 1: NP_001401041.1
• Gene: not / 40030
• FlyBaseID: FBgn0013717
• Length: 703
• Species: Drosophila melanogaster
• Sequence 2: NP_573334.1
• Gene: Usp39 / 32881
• FlyBaseID: FBgn0030969
• Length: 494
• Species: Drosophila melanogaster
• Alignment Length: 482
• Identity: 105/482 - (21%)
• Similarity: 182/482 - (37%)
• Gaps: 101/482 - (20%)

  Fly   261 IQLYACLHC-IYFGCRG--AHITSHLRSKKHNVALELSHGTLYCYACRDFIYDARSREYALINRK 322
            |.:||||.| .||..||  .|..:|...:.|:|.|.|.  ||..|...|        .|.:|:..
  Fly    64 INVYACLVCGKYFQGRGTNTHAYTHSVGEAHHVFLNLH--TLRFYCLPD--------NYEIIDSS 118

  Fly   323 LEAKDLQKSIGWVPWVPTTKETNLLLANARRRLVRPNQTI-------GLRGLLNLGATCFMNCIV 380
            |:.         :.:|.....|...::...:...:.::|:       |:.||.|:.|..:.|.::
  Fly   119 LDD---------IKYVLNPTFTRQEISKLDQLQPKHSRTVDGVLYLPGVVGLNNIKANDYCNVVL 174

  Fly   381 QALVHTPLLSDYFMSDRHDCGSKSSHK-----------CLVCEVSRLFQEFYS--GSRSPLSLHR 432
            .||.|...|.|||:       .|.|:.           .||.....|.::.::  ..:|.:|.|.
  Fly   175 HALSHVGPLRDYFL-------QKQSYAHVVRPPGDSVFTLVQRFGELMRKMWNPRNFKSHVSPHE 232

  Fly   433 LLH--LIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEHESKSNSSGSGSGTNSSNSSSS 495
            :|.  ::|: :|.....||.|..:|....|:.|||                 :..|....|||
  Fly   233 MLQAVVLWS-SKRFQITEQGDPIDFLSWFLNTLHR-----------------ALKGNKHPNSS-- 277

  Fly   496 HCYGQCNCIIDQIFTGML----------QSDVVCQACNGVSTTYDP------FWDISLDLGETTT 544
                    |:.:||.|.:          :.|...:|....:..|..      |..::.||.....
  Fly   278 --------ILYKIFLGEMKIYTRKMPPVELDDAAKAQLLATEEYKDQVEDKNFIYLTCDLPPPPL 334

  Fly   545 HGGVTPKTLIDCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALI 609
            ......:.:|..:..|.........|:.:..|.|:  ...|:|.:..||..:..::|||..:...
  Fly   335 FTDEFRENIIPQVNLYQLLSKFNGTAEKEYKTYKA--NFMKRFEITRLPQFIILYIKRFTKNTFF 397

  Fly   610 DRKISSFIQFP---VEFDMTPFMSEKKNAYGDFRFSLYAVVNHVGTIDTGHYTAYVRHQKD-TWV 670
            ..|..:.:.||   |:|.....|.::.....|.:::|.|.:.|.|....|.|.|::.|:.: .|.
  Fly   398 LEKNPTIVNFPIKHVDFGDILGMRQRDKDVKDTKYNLVANIVHDGDPKKGTYRAHILHKANGQWY 462

  Fly   671 KCDDHVITMASLKQVLDSEGYLLFYHK 697
            :..|..:|....:.:..:|.|:..|.:
  Fly   463 EMQDLHVTEILPQMITLTESYIQIYER 489

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
not	NP_001401041.1	zf-UBP	253..310	CDD:460464	20/51 (39%)
		Peptidase_C19D	365..696	CDD:239125	77/365 (21%)
Usp39	NP_573334.1	Peptidase_C19M	39..488	CDD:239134	104/479 (22%)