DRSC/TRiP Functional Genomics Resources

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Protein Alignment not and Usp32

DIOPT Version :10

Sequence 1:NP_001401041.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:703 Species:Drosophila melanogaster
Sequence 2:XP_038941969.1 Gene:Usp32 / 303394 RGDID:1306657 Length:1683 Species:Rattus norvegicus


Alignment Length:513 Identity:120/513 - (23%)
Similarity:197/513 - (38%) Gaps:139/513 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 YFGCRG---------AHITSHLRSKKHNVALELSHGTLYCYACRDFIYDARSREYALINRK---- 322
            |.||..         .:::..||.|:.::.|.|.:...|.....|   :....||..|..:    
  Rat   717 YTGCFSRMQTIKEIHEYLSQRLRIKEEDMRLWLYNSENYLTLLDD---EDHRLEYLKIQDEQHLV 778

  Fly   323 LEAKDLQKSIGWVPWVPTTKETNLLLANARR--RLVRPNQTIGLRGLLNLGATCFMNCIVQALVH 385
            :|.::  |.:.|       .|....:||:.:  |...|.:. |..||.|||.|||||..:|.:.:
  Rat   779 IEVRN--KDMSW-------PEEMSFIANSSKIDRHKVPTEK-GATGLSNLGNTCFMNSSIQCVSN 833

  Fly   386 TPLLSDYFMSDRH--------DCGSKSSH--KCLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNH 440
            |..|:.||:|.||        ..|.| .|  ||    ...|.||.:||::..::..:|...|..:
  Rat   834 TQPLTQYFISGRHLYELNRTNPIGMK-GHMAKC----YGDLVQELWSGTQKNVAPLKLRWTIAKY 893

  Fly   441 AKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEHESK----SNSSGSGSGTNSSNSSSSHCYGQC 501
            |....|::|||:.|.....||.||....:.   ||..    .:|.|......::.:..:|.....
  Rat   894 APRFNGFQQQDSQELLAFLLDGLHEDLNRV---HEKPYVELKDSDGRPDWEVAAEAWDNHLRRNR 955

  Fly   502 NCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLG-ETTTH--------GGVTP-----KT 552
            :.::| :|.|.|:|.|.|:.|..:|..:|||..:||.|. ::..|        .|.||     :.
  Rat   956 SIVVD-LFHGQLRSQVKCKTCGHISVRFDPFNFLSLPLPMDSYMHLEITVIKLDGTTPIRYGLRL 1019

  Fly   553 LIDCLERYT------------RAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFE- 604
            .:|  |:||            ::|.: ..|::..|..|::.:..::..|.     ||..|..|| 
  Rat  1020 NMD--EKYTGLKKQLSDLCGLKSEQI-LFAEVHSSNIKNFPQDNQKVRLS-----VSGFLCAFEI 1076

  Fly   605 --------HSALIDRKISS--------------------FIQFPVEFDMTPFMSEKKNAYGDFRF 641
                    ..:.|....||                    ||...:...:.|..:||....|    
  Rat  1077 PIPASPVSACSPIQTDCSSSPSTNGLFTVTTNGDLPRPIFIPNGMPNTVVPCGTEKNATNG---- 1137

  Fly   642 SLYAVVN-HVGTIDTGHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLFYHKN 698
                :|| |:..:....:|.|:                :|..::::.:|.|.|...||
  Rat  1138 ----IVNGHMPPLPDDPFTGYI----------------IAVHRKMMRTELYFLSSQKN 1175

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001401041.1 zf-UBP 253..310 CDD:460464 10/47 (21%)
Peptidase_C19D 365..696 CDD:239125 96/400 (24%)
Usp32XP_038941969.1 EFh 302..358 CDD:238008
EF-hand_7 335..407 CDD:463900
UBP12 583..1395 CDD:227847 120/513 (23%)
UCH <1310..1643 CDD:425685
Blue background indicates that the domain is not in the aligned region.

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