DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and Usp22

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001178573.1 Gene:Usp22 / 303201 RGDID:1310354 Length:525 Species:Rattus norvegicus


Alignment Length:526 Identity:272/526 - (51%)
Similarity:348/526 - (66%) Gaps:56/526 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GCRHYQSYVKEHSYDTFRVIDAYFAACVNRDARERKAIHCNCFECGSYGIQLYACLHCIYFGC-R 68
            ||.|..|:..::.....|.|...|......:||:|||..|.|..||.:..:|::||:|::||| .
  Rat    22 GCSHLGSFKVDNWKQNLRAIYQCFVWSGTAEARKRKAKSCVCHVCGIHLNRLHSCLYCVFFGCFT 86

  Fly    69 GAHITSHLRSKKHNVALELSHGTLYCYACRDFIYDARSREYALINRKLEAKDLQ-KSIG--WVPW 130
            ..||..|.:||:||:|::|.:|.:||:.|:|:|||   ::..:|.::.:.|..: :.:|  :..|
  Rat    87 KKHIHDHAKSKRHNLAIDLMYGGIYCFLCQDYIYD---KDIEIIAKEEQRKAWKMQGVGEKFSTW 148

  Fly   131 VPTTKETNLLLANARRRLVRPNQTIGLRGLLNLGATCFMNCIVQALVHTPLLSDYFMSDRHDCGS 195
            .||.:|..||..|.:||.:..|.|||||||:|||.|||||||||||.|||||.|:|:||||.|..
  Rat   149 EPTKRELELLKHNPKRRKITSNCTIGLRGLINLGNTCFMNCIVQALTHTPLLRDFFLSDRHRCEM 213

  Fly   196 KSSHKCLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHC 260
            :|...|||||:|.||||||||.|||...::||||:|.||:|||||||||||||.||.||||||||
  Rat   214 QSPSSCLVCEMSSLFQEFYSGHRSPHIPYKLLHLVWTHARHLAGYEQQDAHEFLIAALDVLHRHC 278

  Fly   261 VKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPF 325
                         .|..:|..::|.:      .|||||||||||.|||||.||.|:|||||.|||
  Rat   279 -------------KGDDNGKKANNPN------HCNCIIDQIFTGGLQSDVTCQVCHGVSTTIDPF 324

  Fly   326 WDISLDL-GETTTHGGVTP----------------KTLIDCLERYTRAEHLGSAAKIKCSTCKSY 373
            ||||||| |.:|....::|                .||.|||.|:||.|||||:||||||.|.||
  Rat   325 WDISLDLPGSSTPFWPLSPGSEGSVVNGESHASGTTTLTDCLRRFTRPEHLGSSAKIKCSGCHSY 389

  Fly   374 QESTKQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPVEFDMTPFMSEKKNA---------- 428
            ||||||.:::.||.|..||||||||||.:.|||::::.||:|.||||||:..|.:          
  Rat   390 QESTKQLTMKKLPIVACFHLKRFEHSAKLRRKITTYVSFPLELDMTPFMASSKESRMNGQYQQPL 454

  Fly   429 ---YGDFRFSLYAVVNHVGTIDTGHYTAYVRHQKDTWVKCDDHVITMASLKQVLDSEGYLLFYHK 490
               ..|.::||:|||||.||:::||||:::|..||.|.||||.:||.||:|.|||||||||||||
  Rat   455 DSLNNDNKYSLFAVVNHQGTLESGHYTSFIRQHKDQWFKCDDAIITKASIKDVLDSEGYLLFYHK 519

  Fly   491 NVLEYE 496
            ..||||
  Rat   520 QFLEYE 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999 25/57 (44%)
Peptidase_C19D 158..489 CDD:239125 208/360 (58%)
Usp22NP_001178573.1 zf-UBP 63..123 CDD:280334 27/62 (44%)
UCH 175..517 CDD:278850 208/360 (58%)
Peptidase_C19D 176..518 CDD:239125 208/360 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353650
Domainoid 1 1.000 416 1.000 Domainoid score I637
eggNOG 1 0.900 - - E1_KOG1867
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H52664
Inparanoid 1 1.050 534 1.000 Inparanoid score I1162
OMA 1 1.010 - - QHG59954
OrthoDB 1 1.010 - - D200191at33208
OrthoFinder 1 1.000 - - FOG0002382
OrthoInspector 1 1.000 - - otm45217
orthoMCL 1 0.900 - - OOG6_102914
Panther 1 1.100 - - LDO PTHR21646
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1575
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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