DRSC/TRiP Functional Genomics Resources

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Protein Alignment not and ubp12

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_588530.1 Gene:ubp12 / 2538990 PomBaseID:SPCC1494.05c Length:979 Species:Schizosaccharomyces pombe


Alignment Length:695 Identity:122/695 - (17%)
Similarity:181/695 - (26%) Gaps:387/695 - (55%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GLRGLLNLGATCFMNCIVQALVHTPLLSDYFMSDR-HDCGSKSSHKCLVCEVSRLF----QEFYS 215
            |..||.|||.||:||..:|.|.||..|.|:|.||. .:..::|:...:..:|:.:|    :..||
pombe   309 GTCGLSNLGNTCYMNSALQCLTHTRELRDFFTSDEWKNQVNESNPLGMGGQVASIFASLIKSLYS 373

  Fly   216 GSRSPLSLHRLLHLI--WNHAKHLAGYEQQDAHEFFIATLDVLHRHC------------------ 260
            ...|..:..:....|  :||:  ..||.|||:.||....||.||...                  
pombe   374 PEHSSFAPRQFKATIGKFNHS--FLGYGQQDSQEFLAFLLDGLHEDLNRIYQKPYTSKPDLYEVD 436

  Fly   261 ---VKAKAE-----HESKSNSSGSGSGTNSSNSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNG 317
               :|..||     |:.:::|                       :|..:|.||.:|.:||..||.
pombe   437 EEKIKNTAEECWRLHKLRNDS-----------------------LIVDLFQGMYRSTLVCPVCNT 478

  Fly   318 VSTTYDPFWDI------------------------------------------------------ 328
            ||.|:|||.|:                                                      
pombe   479 VSITFDPFMDLTLPLPVKQVWSHTVTFIPADTNLTPLAIEVVLESKAATIEDLVKYVAEKSGCSD 543

  Fly   329 ----------------------------------------------------------------- 328
                                                                             
pombe   544 YRKILVTETYKGRFYRFLTQLSKSLLMEISEEDEIYLYELERPYEDGSDDILVPVYHISDDSTNS 608

  Fly   329 -----------------------------------------------------SLDLG------- 333
                                                                 ||:||       
pombe   609 ANSYMSSRDFGHPFVLQLSDNEVTDASFISEKLKLKYQQFTTLKNLKNIDSLESLELGHEDEQVQ 673

  Fly   334 --------------------------------------------------ETT-----THG---- 339
                                                              |:|     .|.    
pombe   674 KGPLDVDMDHSQTPLFEMRVFHDRFEKIPTGWNMSVSNLPLLTERDKKDLESTVDPLDAHSIEEE 738

  Fly   340 -----------------------------------------------------GVTPK------- 344
                                                                 .|.|.       
pombe   739 DDSEFKDVAPGSYPEPSKSNENTKLTAKENDRLLIQGDLLVCEWPEKSYQFVFSVAPSSPQMGRS 803

  Fly   345 ----------------------TLIDCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPS 387
                                  ||.|||:.:.:.|.||......|.|||.:::::||..:...|.
pombe   804 LWLESKTILSDKKDDSEDSRTITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPE 868

  Fly   388 VVSFHLKRFEHSALIDRKISSFIQFPVE-FDMTP-----FMSEKKNAYGDFRFSLYAVVNHVGTI 446
            ::.||||||........||...::||:: .||:.     .:|||:|.  ...:.||||.||.|.:
pombe   869 ILIFHLKRFSSERRFRDKIDDLVEFPIDNLDMSMRTGSYKLSEKENP--KLIYELYAVDNHYGGL 931

  Fly   447 DTGHYTAYVRHQKDTWVKC-DDHVITMASLKQVLDSEGYLLFYHK 490
            ..|||||:.::..:....| ||..:|....::.:.|..|||||.:
pombe   932 GGGHYTAFAKNPDNGQFYCFDDSRVTPVCPEETVTSAAYLLFYRR 976

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999
Peptidase_C19D 158..489 CDD:239125 120/690 (17%)
ubp12NP_588530.1 UBP12 33..978 CDD:227847 122/695 (18%)
DUSP 69..155 CDD:197831
Peptidase_C19 312..>513 CDD:271592 59/225 (26%)
USP7_C2 519..>648 CDD:291217 0/128 (0%)
Peptidase_C19R <825..975 CDD:239139 52/151 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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