DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and Usp11

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_663603.3 Gene:Usp11 / 236733 MGIID:2384312 Length:921 Species:Mus musculus


Alignment Length:639 Identity:109/639 - (17%)
Similarity:177/639 - (27%) Gaps:309/639 - (48%)


- Green bases have known domain annotations that are detailed below.


  Fly   156 GLRGLLNLGATCFMNCIVQALVHTPLLSDYFMSDRH--------DCGSKSSHKCLVCEVSRLFQE 212
            |:.||.|||.|||||..:|.|.:.|.|::||:::|:        ..|.|..   |....:.|.::
Mouse   255 GICGLTNLGNTCFMNSALQCLSNVPQLTEYFLNNRYLEELNFRNPLGMKGE---LAEAYADLVKQ 316

  Fly   213 FYSGSRSPLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKA-KAEHESKSNSSGS 276
            .:||....:..:...:.:.:.|....||:|.|:.|.....||.||....:. |.|:....|.:|.
Mouse   317 TWSGYHRSIVPNVFKNKVGHFASQFLGYQQHDSQELLSFLLDGLHEDLNRVKKKEYVELCNGAGR 381

  Fly   277 GSGTNSSNSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLG-------- 333
            .....:..:..:|.....:.|:| .|.|:.:|.:||..|..||.|:|||..:|:.|.        
Mouse   382 PDLEVAQEAWQNHKRRNDSVIVD-TFHGLFKSTLVCPDCGNVSVTFDPFCYLSVPLPVCSRRVLE 445

  Fly   334 ------------------------------ETTTHGGVTPKTLI--------------------- 347
                                          ..:||..|.|..:|                     
Mouse   446 VFFVPMDPRRKPEQHRVVVPKKGNISDLCVALSTHTSVAPDKMIVADVFSHRFYKLYQLEDPLSG 510

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Mouse   511 ILDRDDIFVYEVTGRIEPVEGSRDDIVVPVYLRERTPSRDYNNSYYGLILFGHPLLVSVPRDRFS 575

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Mouse   576 WEGLYNILMYRLSRYVTKPTSDEDDGDEKVDEDEDEDVEDDSSSEEEKEEMSAPTVNDGTREAEQ 640

  Fly   348 ----------------------------------------------------------------- 347
                                                                             
Mouse   641 EQAGTSSGVTERCPSLLDNSLRASQWPPRRRRKQLFTLQTVNSNGTSDRTTSPEEMQTQPYIAMD 705

  Fly   348 ------------------------------------DCLERYTRAEHLGSAAKIKCSTCKSYQES 376
                                                :|::.:|..|.|.......||:||.:|.:
Mouse   706 WEPDMKRRYYDEVEAEGYVKHDCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLA 770

  Fly   377 TKQFSLRTLPSVVSFHLKRFEHSALIDRKISSFIQFPV-EFDMTPFMSEKKNAYGD--FRFSLYA 438
            ||:..|..||.|:..|||||..|.:...|:.:.:|||: :.|.:.|:.:.||....  :::.|.|
Mouse   771 TKKLDLWMLPEVLIIHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIA 835

  Fly   439 VVNHVGTIDTGHYTAYVRHQKDT--WVKCDDHVITMASLKQVLDSEGYLLFYHK 490
            |.||.|.:..||||.:..: ||:  |...||:.::..:..|:.....|:|||.:
Mouse   836 VSNHYGGMRDGHYTTFACN-KDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQR 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999
Peptidase_C19D 158..489 CDD:239125 107/634 (17%)
Usp11NP_663603.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29
UBP12 23..888 CDD:227847 109/637 (17%)
DUSP 44..136 CDD:197831
Ubiquitin_3 154..233 CDD:291502
Peptidase_C19 <254..>370 CDD:271592 34/117 (29%)
Peptidase_C19 258..>437 CDD:271592 53/182 (29%)
USP7_C2 428..>541 CDD:291217 9/112 (8%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 593..668 0/74 (0%)
Peptidase_C19R <737..887 CDD:239139 48/150 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 893..921
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.940

Return to query results.
Submit another query.