DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and usp-3

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_493434.3 Gene:usp-3 / 190579 WormBaseID:WBGene00013506 Length:550 Species:Caenorhabditis elegans


Alignment Length:542 Identity:134/542 - (24%)
Similarity:205/542 - (37%) Gaps:129/542 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 RERKAIHCNCFECGSYGIQLYACLHCIYFGC---RGAHITSHLRSKKHNVALELSHGTLYCYACR 98
            :.::.|...|.||.:....| .||.|....|   ...|...|.....|.|.::.....||||:|.
 Worm    44 KNQEIIKTFCDECDNCNKSL-MCLTCGRILCGRNDSGHALHHFEETSHPVVIDCISFELYCYSCD 107

  Fly    99 DFI-YDARSREYALI-NRKL--EAKDLQKSIGWVPWVP-----------TTKETNLLLANARRR- 147
            |.: .|.....|.:: :.||  :.:|:.:. |..|.:|           :|....|.:|.|.|. 
 Worm   108 DEVSLDFEPSLYGVLKSLKLLFDREDVMEG-GDGPTIPAQPFQTVTSVASTFTQKLHVAPASRNS 171

  Fly   148 ---------------------------------LVRPNQTIG--------------LRGLLNLGA 165
                                             |...|.|..              .||:.|:|.
 Worm   172 KKKRGKKGKVSPMFVDTPPFQQQQGAAVIHDVTLSSTNSTSSGSGGATSSSEIAYRPRGMRNVGN 236

  Fly   166 TCFMNCIVQALVHTPLLSDYFMSDR------HD----------CGSKSSH-KCLVCEVSRLFQEF 213
            |||||.::|||.......:|.||..      ||          |.....: |.|:.:.:|.|:| 
 Worm   237 TCFMNAVLQALASISEFREYIMSLSSLEDYIHDEKEPKNGGNYCYLTDEYRKLLISQSARSFRE- 300

  Fly   214 YSGSRSPLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLH---RHCVKAKAEHESKSNSSG 275
                  |.:.:.......:......|:.|.|:|||....:|.||   |.|.|.....:.|...  
 Worm   301 ------PTAPNEFREAFISVCPRFRGFRQHDSHEFMRYFMDSLHTEMRKCRKLPGMPDDKHTP-- 357

  Fly   276 SGSGTNSSNSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLGETTTHGG 340
                                  |.:.|.|.|||.|:||.|...|...|.|.|:|||:   .....
 Worm   358 ----------------------ISKYFEGTLQSSVICQTCRNCSNKIDEFMDLSLDI---PAQRN 397

  Fly   341 VTPKTLIDCLERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLKRFEHSALIDRK 405
            .:...|.|||..:.:.|.|....|.:|:.||:.|..:||..:|.||.|:..|:|||..:.   .|
 Worm   398 ASKVRLSDCLSTFFKLEMLEKGEKPECAKCKTKQTCSKQMFIRKLPQVLCLHMKRFRDNG---GK 459

  Fly   406 ISSFIQFPV-EFDMTPFMSEKKNAYGDFRFSLYAVVNHVG-TIDTGHYTAYVRHQKDTWVKCDDH 468
            ..:.|.||: :.|:|.|:::..:. ....:||.:::.|:| ...:|||.|:.: :...|.:.||.
 Worm   460 NDAIIDFPMGQLDVTQFLTDDSDE-APCTYSLQSIIVHIGYGCGSGHYIAFGK-RNGRWFQFDDT 522

  Fly   469 VITMASLKQVLDSEGYLLFYHK 490
            |:.......|...:.|:|.|.|
 Worm   523 VVKGVDEAHVSKQKAYVLLYTK 544

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999 18/60 (30%)
Peptidase_C19D 158..489 CDD:239125 97/352 (28%)
usp-3NP_493434.3 zf-UBP 53..111 CDD:366940 18/58 (31%)
UCH 229..542 CDD:366104 97/351 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1867
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 160 1.000 Inparanoid score I2878
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D929408at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1591
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.900

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