DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and usp38

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_004911187.1 Gene:usp38 / 100498537 XenbaseID:XB-GENE-994000 Length:1034 Species:Xenopus tropicalis


Alignment Length:632 Identity:124/632 - (19%)
Similarity:194/632 - (30%) Gaps:256/632 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 HITSHLRSKKHN----------VALELSHGTLYCYACRDFIYDARSREYALINRKLEA-KDLQKS 124
            |:.|.::|.|::          ...||.|..:|.::....:|:.          .||| |||.| 
 Frog   354 HVVSLVQSFKNDGLPTITTFLAQFAELMHCMIYHFSGFPDLYEP----------ILEALKDLPK- 407

  Fly   125 IGWVPWVPTTKETNLLLANAR-----------RRLVRPNQTIGLRGLLNLGATCFMNCIVQALVH 178
                   |:.::..|.|..:.           .||...::| |..||:|||.||:||.::|||. 
 Frog   408 -------PSEEKIKLTLNQSAWTSQSSTLASLPRLSGKSET-GKTGLINLGNTCYMNSVLQALF- 463

  Fly   179 TPLLSDYFMSDRHDC------GSKSSHKCLVCEVSRLF-------------QEFYSGSRSPLSLH 224
              :.:|:    |...      |:.|    |:.::..||             |.|:..||.|....
 Frog   464 --MATDF----RRQVLSLNLNGTNS----LMKKLQHLFAFLAHTQREAYAPQTFFDASRPPWFTP 518

  Fly   225 RLLHLIWNHAKHLAGYEQQDAHEFFIATLDVLHRH-------CVKAKAE---HESKSNSSGSGSG 279
            |               .|||..|:....||.|...       |.|...:   |:.....|.:...
 Frog   519 R---------------SQQDCSEYLRFLLDRLDEEEKTIKALCSKLPLDASVHDCIVEESSASVS 568

  Fly   280 TNSSN----SSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISL---------- 330
            .:.||    ..|..|..:...:|:.:|.|.||:::.|..|...|...:.|.|:||          
 Frog   569 DDISNHYCTKGSKGCGNKEKSLIENMFGGKLQTNICCLNCRSTSQKREAFTDLSLAFCPTLVDKP 633

  Fly   331 ------------------------DLGETTTHGGVTP----------KTLIDC------------ 349
                                    .|..:|....|.|          ||.:.|            
 Frog   634 VQSTLGSPKQKDDDDCIETDIASSTLAPSTEDVNVGPENEISECEEVKTNVSCVLDNSVCANAIE 698

  Fly   350 --------------------LERYTRAEHLGSAAKIKCSTCKSYQESTKQFSLRTLPSVVSFHLK 394
                                |..:...|.|....:..|..|.|.|.:.|...:...|..:...|.
 Frog   699 SDEMPTQNNRRERTLSVTDLLNYFLAPEILDGDNQYYCEKCASLQNAKKTMQIMEEPEYLILTLL 763

  Fly   395 RFEH--SALIDRKISSFIQFPVEFDMTPFMSEKKNAYGDFR------------------------ 433
            ||.:  ...:.|||...:..|:..::....:....:.||:.                        
 Frog   764 RFSYDPKCHVRRKIMDNVSIPLVLELPVERTTSPTSPGDWTLETDIPDVSENLAKKLKPSNTEDL 828

  Fly   434 -------FSLYAVVNHVGT-IDTGHYTAYVRH-------------------------------QK 459
                   :.|.:||.|.|| .::|||.:|.|:                               .|
 Frog   829 CCSHPVPYVLSSVVVHSGTSSESGHYYSYARNVTSTERCLYAEKSCYSHGQLVERETGSSVMTHK 893

  Fly   460 DT--------WVKCDDHVITMASLKQVLD-------SEGYLLFYHKN 491
            ||        |...:|..:|..|.:.||:       ...|:|.|.|:
 Frog   894 DTQCNDISKEWFLFNDSRVTFTSFQSVLNITSRFPKDTAYVLIYRKH 940

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999 8/41 (20%)
Peptidase_C19D 158..489 CDD:239125 99/519 (19%)
usp38XP_004911187.1 Peptidase_C19H 445..938 CDD:239129 99/518 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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