DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and usp13

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001363854.1 Gene:usp13 / 100498395 XenbaseID:XB-GENE-998128 Length:849 Species:Xenopus tropicalis


Alignment Length:704 Identity:109/704 - (15%)
Similarity:196/704 - (27%) Gaps:349/704 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 CIYFGCRGA----HITSHLRSKKHNVALELSHGT-----LYCYACRDFIYDARSREYALINRKLE 117
            |..:.|.|:    |...|.:...:.:|:.|...|     :|.:...:.:.|....:: |.:..::
 Frog   217 CGRWFCSGSGGNGHALEHHKQMGYPLAVRLGSITPDGADVYSFDEEEAVIDPHLAKH-LAHFGID 280

  Fly   118 AKDLQKSIGWV----------PWVPTTKETNLLLANARRRLVRPNQTIGLRGLLNLGATCFMNCI 172
            ...:|.|...|          .| ...:||.|.|        :|....|..|:.|||.:.::..:
 Frog   281 MLQMQGSENGVLDNEVKPRVNEW-EVIQETGLKL--------KPMFGSGYTGIKNLGNSSYLTTV 336

  Fly   173 VQALVHTP-----------------------------------LLSDYF-------------MSD 189
            :|.:...|                                   |||..|             |.:
 Frog   337 MQVIFSIPEFQRAYVGNLTRIFDYAPLDPTQDFSTQMAKLGHGLLSGQFSKPPMKSELIEQVMKE 401

  Fly   190 RHDCGSKSSHKCLVCEVSRLFQEFYSGSRSPLSLHRLLHLIWNHAKHLAGYEQQDAHEFFIATLD 254
            .|....|..:       :|:|:...|...:..|.:|                ||||.|||:..::
 Frog   402 EHKPQPKGIN-------TRMFKALMSKGHTEFSSNR----------------QQDAEEFFLHFIN 443

  Fly   255 VLHRHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYGQCNCIIDQIFTGMLQSDVVCQACNGVS 319
            ::.|:.:.|:                |.|:                :|..:::....|  |....
 Frog   444 LVERNSIGAE----------------NPSD----------------VFRFLVEERTQC--CQSRK 474

  Fly   320 TTYDPFWDISLDLG---ETTTH----------------GGVTPKTLI-------DCLERYTRAEH 358
            ..|....|..:.|.   ||.|:                ....|..|:       .||:.:|..|:
 Frog   475 VRYTERVDYIMQLPVPMETATNKEELIAYDLKRREAESAKRPPPELVRAKIPFSACLQAFTEPEN 539

  Fly   359 L---------GSAAKIKCSTCKSYQE----STKQFSLR------------TLPSVVSF-HLKRF- 396
            :         ..:|.:|.|...|:.|    ..|:|:..            .:|.::.. ||:.. 
 Frog   540 VPDFWSSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLRATG 604

  Fly   397 ----------------------EHSAL-------IDRKISSFIQ-----FPVE------------ 415
                                  :||..       ||.  ||.:|     ||:|            
 Frog   605 LKSGEEELPDIAPPIIIPDDPNDHSRNHFMEYPDIDE--SSVMQLAEMGFPLEACRKAVYYTGSM 667

  Fly   416 -----FD----------------------MTPFMSEKKNAY------------------------ 429
                 |:                      :|...|..:||.                        
 Frog   668 GAEVAFNWIIAHMEEPDFAEPLIIPGCGTVTSTSSHGQNALLNQPPEEIVALICSMGFPRNHALQ 732

  Fly   430 -------------------------------------------------------GDFRFSLYAV 439
                                                                   |:.|:.|:.:
 Frog   733 ALRATNNNLERALDWMFSHPESEEGADNVSGCVDTENNPNGIITDSEQEGPRIKDGNGRYELFGI 797

  Fly   440 VNHVGTID-TGHYTAYVRHQKDTWVKCDDHVITMASL--KQVLDSEGYLLFYHK 490
            ::|.||.. :|||..::: ::..||..:||.::.:..  |::    ||:.|||:
 Frog   798 ISHAGTSTMSGHYVCHIK-KEGRWVIYNDHKVSASERPPKEL----GYIYFYHR 846

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999 9/49 (18%)
Peptidase_C19D 158..489 CDD:239125 86/586 (15%)
usp13NP_001363854.1 UBP14 13..847 CDD:227532 109/704 (15%)
Peptidase_C19B 323..844 CDD:239123 85/584 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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