DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment not and usp49

DIOPT Version :9

Sequence 1:NP_001287106.1 Gene:not / 40030 FlyBaseID:FBgn0013717 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_002933022.1 Gene:usp49 / 100488823 XenbaseID:XB-GENE-976521 Length:686 Species:Xenopus tropicalis


Alignment Length:677 Identity:159/677 - (23%)
Similarity:235/677 - (34%) Gaps:232/677 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 CRHY--QSYVKEHSYDTFRVIDAYFAACVNRDARERKAIHCNCFECGSYGIQLYACLHCIYFGCR 68
            |:|.  ....::||     :::.....||:.|.:|                .::|||.|.:..| 
 Frog     4 CKHVGRLRLAQDHS-----ILNPQKWRCVDCDTKE----------------SVWACLKCSHVAC- 46

  Fly    69 GAHITS----HLRSKKHNVALELSHGTLYCYACRDFI--------------------------YD 103
            |.:|..    |.:...|.:.:|:....::||.|:|::                          |.
 Frog    47 GRYIEEHSLRHFQESSHPLVMEVHELYVFCYLCQDYVLNDNPEGDLKLLRSALSAVWTQKQEAYS 111

  Fly   104 AR-------SREYALINRKLEAKDLQKSIGWVP-----------W-------------------- 130
            .|       |||.|..:|..:.:.|..:..|..           |                    
 Frog   112 RRSLRSQVTSREGAGCHRTSQGQPLMLTALWHRRQALLAKALRLWFERSSRGQLKLEEKRQRVEL 176

  Fly   131 ------------------------VPTTKETNLL-----------------------LANARRRL 148
                                    .|..|...||                       ...||||.
 Frog   177 ERRKEEARLRRQEVKRRLLEELANTPPRKSARLLSHAHTDSLIPQKFRDITASSPASQREARRRF 241

  Fly   149 -----VRPNQTIGLRGLLNLGATCFMNCIVQALVHTPLLSDYFM----SDR-------------- 190
                 :||..|.|:.||.|||.||:||.|:|.|.|.....:.|:    |::              
 Frog   242 NQLYSIRPTVTPGVTGLRNLGNTCYMNSILQVLSHLQKFRECFLTLDPSEKEELLARTGTNGKRR 306

  Fly   191 -------HDCGS---------------------KSSHKCLVCEVSRLFQEFYSGSRSPLSLHRLL 227
                   |..|.                     .:.|..|..|:..||:..:||..:.:|...:|
 Frog   307 VGDAGGGHPVGGIGLNGGSSITKSLELIQPKEPSTKHLSLCHELHTLFRVMWSGKWALVSPFAML 371

  Fly   228 HLIWNHAKHLAGYEQQDAHEFFIATLDVLHRHCVKAKAEHESKSNSSGSGSGTNSSNSSSSHCYG 292
            |.:|:......||:||||.||....||         |.:.|.:|..|........|....:.   
 Frog   372 HSVWSLIPAFRGYDQQDAQEFLCELLD---------KVQQELESEGSKRRILIPISQRKLTK--- 424

  Fly   293 QCNCIIDQIFTGMLQSDVVCQACNGVSTTYDPFWDISLDLGET--TTHGGVTPKTLIDC-----L 350
            |...:::.||.|.|.|.|.|..|:..|.|.:||||:||:..|.  :...|:.|.|..:|     |
 Frog   425 QVLKVVNTIFHGQLLSQVTCLKCSYKSDTVEPFWDLSLEFPERYHSQEKGIAPVTTTECTLTEML 489

  Fly   351 ERYTRAEHLGSAAKIKCSTCKS-----------YQESTKQFSLRTLPSVVSFHLKRFEHSALIDR 404
            .::|..|.| ......|..|.|           ..|:.||..:..||.|:..|||||..|....|
 Frog   490 AKFTETEAL-EGRIYACDQCNSKRRKSSPKPLVLSEAKKQLMIFRLPQVLRLHLKRFRWSGRNHR 553

  Fly   405 -KISSFIQFPVEFDMTPFM-----SEKKNAYGDFRFSLYAVVNHVGT-IDTGHYTAYVRH-QKDT 461
             ||...:.|....:|.|:.     .....||   .:.|.|||.|.|. ..:||||||..: :...
 Frog   554 EKIGVHVFFDQVLNMEPYCRSVLPPSNPEAY---LYDLSAVVMHHGKGFGSGHYTAYCYNTEGGF 615

  Fly   462 WVKCDDHVITMASLKQVLDSEGYLLFY 488
            ||.|:|..:.|.|:::|..::.|:|||
 Frog   616 WVHCNDSKLNMCSVEEVCRTQAYILFY 642

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
notNP_001287106.1 zf-UBP 46..103 CDD:307999 14/86 (16%)
Peptidase_C19D 158..489 CDD:239125 115/403 (29%)
usp49XP_002933022.1 zf-UBP 26..87 CDD:366940 18/77 (23%)
COG4372 <96..>239 CDD:226809 15/142 (11%)
UCH 256..642 CDD:366104 113/401 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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