DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32199 and p4ha1

DIOPT Version :9

Sequence 1:NP_730347.1 Gene:CG32199 / 40028 FlyBaseID:FBgn0052199 Length:509 Species:Drosophila melanogaster
Sequence 2:XP_031761963.1 Gene:p4ha1 / 100490484 XenbaseID:XB-GENE-987760 Length:526 Species:Xenopus tropicalis


Alignment Length:549 Identity:173/549 - (31%)
Similarity:260/549 - (47%) Gaps:92/549 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 YSTSVMSMMKLLEMEESLKTNLDIYVQEMQSKLDLIKLYQDSLKRVTLTTLEEKEEYVSNPLNAF 67
            :.||:..|:.||..|:.|.|:|..|::..:.||..||.:.|.|..:|.|..::.|.|:.:|:|||
 Frog    20 FFTSIGHMIDLLNTEKDLVTSLKDYIKAEEQKLAQIKKWADKLDHLTDTATKDPEGYLGHPVNAF 84

  Fly    68 PMLRRLNQDWPKWLRYIKLAIASKKIKEMEVQLKSAPIDDDLKVALKGMTRIEKFHNLHAEDLTK 132
            .:::|||.:|.|....|...|:...|..:.:|.:..|.|:|...|.|.:.|::..:||..:.::|
 Frog    85 KLMKRLNTEWVKLENLILKDISDGFISNLTIQRQYFPNDEDQTGAAKALLRLQDTYNLDTDTISK 149

  Fly   133 GVLMGKKLNSHLTAPDCVALGDYYYNQTQFSGSTHWYRMALRVHTHPRGMIYAKVLGLKRKRIYK 197
            |.|.|.|..:.|||.||..||...|....:..:..|...||............||:.|.    |.
 Frog   150 GNLPGVKHKTSLTAEDCFDLGKTAYTDADYYHTELWMEQALSQLDAGEESSLDKVMVLD----YL 210

  Fly   198 KYA--------KA--LLKESL-------------------NSDKSKPTPTEKSEWNRLAKEVTRE 233
            .||        ||  |.|.||                   .|:||..:|:|.:|..      ||:
 Frog   211 SYAVYQQGDLDKALTLTKRSLELDPEHQRGNGNLRHIMSKESNKSSSSPSEGAELR------TRK 269

  Fly   234 DN-YDNVKKLIDEYLSGDEKIFQEVAARLKRKPTKLERGCRGEWPKKSS---PELICRY-NRDTS 293
            .. .|:::|                        .|.|:.||||..|.:|   ..|.||| :....
 Frog   270 GRPKDHLEK------------------------EKYEKLCRGEGVKMTSRRQKRLFCRYFDGKKD 310

  Fly   294 AFLKLAPLKLEFLSVQPMILLYHDVLYENEFKSMRDIA---MYNGSMIDGWTYVDFDKKGNP--- 352
            ..|.|:|.|.|....:|.|:.|||::.:.|...::::|   :...::            .||   
 Frog   311 PLLILSPTKQEDEWDKPRIVRYHDIISDEEISKVKELAKPRLRRATI------------SNPITG 363

  Fly   353 ---KQQDRVVKMIAFQGTTAPFTLSINRRMADMSGLEMRDNMVLYLTNYGLGGHFGKHVDYVELA 414
               ..|.|:.|.....|...|....:|||:..::||:|.....|.:.|||:||.:..|.|:  |.
 Frog   364 VLETAQYRITKSAWLSGYEDPVVARLNRRIEGVTGLDMSTAEELQVANYGIGGQYEPHFDF--LR 426

  Fly   415 KRPPDFFADFG-GDRIATALIYASDIPLGGTTVFTKLKIAVQPKKGSALIWFNLNHAGEPDPLTE 478
            |..||.|...| |:|:||.|.|.||:..||.|||.::..||.||||:|:.|:||..:||.|..|.
 Frog   427 KYEPDAFKKLGTGNRVATWLFYMSDVEAGGATVFPEVGAAVYPKKGTAVFWYNLLESGEGDYSTR 491

  Fly   479 HSVCPVVLGSRWIISKWIHERQQVFKKPC 507
            |:.|||::|::|:.:||||||.|.|::||
 Frog   492 HAACPVLVGNKWVSNKWIHERGQEFRRPC 520

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32199NP_730347.1 P4Ha_N 6..135 CDD:285528 42/128 (33%)
P4Hc <369..497 CDD:214780 56/128 (44%)
p4ha1XP_031761963.1 P4Ha_N 24..111 CDD:400573 29/86 (34%)
P4Hc 337..510 CDD:214780 64/186 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.110

Return to query results.
Submit another query.