DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18231 and p4ha1

DIOPT Version :9

Sequence 1:NP_649045.2 Gene:CG18231 / 40026 FlyBaseID:FBgn0036796 Length:470 Species:Drosophila melanogaster
Sequence 2:XP_031761963.1 Gene:p4ha1 / 100490484 XenbaseID:XB-GENE-987760 Length:526 Species:Xenopus tropicalis


Alignment Length:531 Identity:126/531 - (23%)
Similarity:228/531 - (42%) Gaps:121/531 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 YSSITRLLKLLEMEEIFITNIKAYTNKLAEKVKNLQAYIDSVDYEFQQSFEDREKYVGNPINAFS 81
            ::||..::.||..|:..:|::|.|.....:|:..::.:.|.:|:....:.:|.|.|:|:|:|||.
 Frog    21 FTSIGHMIDLLNTEKDLVTSLKDYIKAEEQKLAQIKKWADKLDHLTDTATKDPEGYLGHPVNAFK 85

  Fly    82 LVRRTHQDLPKWHNYSQQIVGMEELFALEEIIAK----------------VPDKKDMAYSLGEMH 130
            |::|.:.:..|                ||.:|.|                .|:.:|...:...:.
 Frog    86 LMKRLNTEWVK----------------LENLILKDISDGFISNLTIQRQYFPNDEDQTGAAKALL 134

  Fly   131 RIEQIYDLEAIELARGRIQGKQYDFRPSIRDCVALGEHKFKREDYQRASMWFRVAIKHEPEGNAE 195
            |::..|:|:...:::|.:.|.::....:..||..||:..:...||....:|...|:.....|...
 Frog   135 RLQDTYNLDTDTISKGNLPGVKHKTSLTAEDCFDLGKTAYTDADYYHTELWMEQALSQLDAGEES 199

  Fly   196 IINSILGDPKVNLYTLYAKSMLIFGMIKSNPSMTI--------AEAKKISYEALNKASLADIKSL 252
            .::.::....:: |.:|.:..|...:..:..|:.:        ...:.|..:..||:|.:..:..
 Frog   200 SLDKVMVLDYLS-YAVYQQGDLDKALTLTKRSLELDPEHQRGNGNLRHIMSKESNKSSSSPSEGA 263

  Fly   253 LNELLSQTDDEIVYEMNVNKTKPSD------YEIGCRGQFL-----RRRNHVCTY-NFTITEFLK 305
                          |:...|.:|.|      ||..|||:.:     |::...|.| :......|.
 Frog   264 --------------ELRTRKGRPKDHLEKEKYEKLCRGEGVKMTSRRQKRLFCRYFDGKKDPLLI 314

  Fly   306 LAPLKQEVLNWD-PYIVIYHDVLNDDEIDKLKNHLND-----------TDAVEV----------- 347
            |:|.|||. .|| |.||.|||:::|:||.|:|.....           |..:|.           
 Frog   315 LSPTKQED-EWDKPRIVRYHDIISDEEISKVKELAKPRLRRATISNPITGVLETAQYRITKSAWL 378

  Fly   348 ----NPIEKRIFQRINELTRLSFEHSDQQIVSKNG------PR---THKHKKEYLK--------G 391
                :|:..|:.:||..:|.|....:::..|:..|      |.   ..|::.:..|        .
 Frog   379 SGYEDPVVARLNRRIEGVTGLDMSTAEELQVANYGIGGQYEPHFDFLRKYEPDAFKKLGTGNRVA 443

  Fly   392 TLLFFLNNVELGGAMVFPKLKISVFPQKGSCLFWHNTL-----DPRSEPLECPVLQGNKRV---- 447
            |.||::::||.|||.|||::..:|:|:||:.:||:|.|     |..:....||||.|||.|    
 Frog   444 TWLFYMSDVEAGGATVFPEVGAAVYPKKGTAVFWYNLLESGEGDYSTRHAACPVLVGNKWVSNKW 508

  Fly   448 ITQKGAYNGRP 458
            |.::|....||
 Frog   509 IHERGQEFRRP 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18231NP_649045.2 P4Ha_N 19..148 CDD:285528 32/144 (22%)
2OG-FeII_Oxy 322..449 CDD:304390 49/178 (28%)
p4ha1XP_031761963.1 P4Ha_N 24..111 CDD:400573 25/102 (25%)
P4Hc 337..510 CDD:214780 46/172 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

Return to query results.
Submit another query.