DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG18233 and AT5G18900

DIOPT Version :10

Sequence 1:NP_649044.3 Gene:CG18233 / 40025 FlyBaseID:FBgn0036795 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_197391.1 Gene:AT5G18900 / 832008 AraportID:AT5G18900 Length:298 Species:Arabidopsis thaliana


Alignment Length:239 Identity:61/239 - (25%)
Similarity:115/239 - (48%) Gaps:41/239 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 LFPKKSNLVCRYNSSTNAFLKLAPLKMEEISRDPYIVMFHEVISDKDIEEM---------KGEIT 345
            |....::|:    ||::.|:.  |.|::::|..|...::...:::.:.:.|         :..:.
plant    17 LLQSSTSLI----SSSSVFVN--PSKVKQVSSKPRAFVYEGFLTELECDHMVSLAKASLKRSAVA 75

  Fly   346 EMENGWTSLGDPKEIVSRVYWIRKESSFSKRINQRISDMTGFKLEEFPAIQLANFGVGGYFKPHY 410
            :.::|.:...:.: ..|..:..:.:......|..:||..|....|....||:..:..|..:..|:
plant    76 DNDSGESKFSEVR-TSSGTFISKGKDPIVSGIEDKISTWTFLPKENGEDIQVLRYEHGQKYDAHF 139

  Fly   411 DFYTDRLKEVDVNNTLGDRIGSIIFYAGEVSQGGQTVFPDLK---------------------VA 454
            |::.|::..|    ..|.|:.:|:.|...|::||:|||||.:                     :|
plant   140 DYFHDKVNIV----RGGHRMATILMYLSNVTKGGETVFPDAEIPSRRVLSENKEDLSDCAKRGIA 200

  Fly   455 VEPKKGNALFWFNAFDDSTPDPRSLHSVCPVLVGSRWTITKWLH 498
            |:|:||:||.:||...|:.|||.|||..|||:.|.:|:.|||:|
plant   201 VKPRKGDALLFFNLHPDAIPDPLSLHGGCPVIEGEKWSATKWIH 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18233NP_649044.3 P4Ha_N 34..164 CDD:462433
P4Hc 333..498 CDD:214780 51/194 (26%)
AT5G18900NP_197391.1 PLN00052 33..298 CDD:177683 56/219 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.