DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18233 and p4ha2

DIOPT Version :9

Sequence 1:NP_649044.3 Gene:CG18233 / 40025 FlyBaseID:FBgn0036795 Length:515 Species:Drosophila melanogaster
Sequence 2:XP_012814344.2 Gene:p4ha2 / 493342 XenbaseID:XB-GENE-957618 Length:537 Species:Xenopus tropicalis


Alignment Length:523 Identity:149/523 - (28%)
Similarity:253/523 - (48%) Gaps:73/523 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 LVKLLKMEQEFMVNFSIYANILQEKVDNLNIFLDALKRPNHKTHNEREKFVSNPLNAFGLIRRLN 102
            :..|:..|::.:.:...|....:|::..:..:...:...:.::..:.|.::.:|:||:.|::|.|
 Frog    30 MTDLIFRERDLLQSLKEYIREEEERLSKIKRWASEVDELSSRSTADPEGYLGHPVNAYKLVKRFN 94

  Fly   103 QDWPKLQNYTQKPLGLEQLTAMQDIVSA-----------APESFDMNEKLKAMHRIETTYDLQPK 156
            .||..|:|           ..:||....           .|...|.....:|:.||:.||.|.|.
 Frog    95 TDWSSLEN-----------LVLQDSAKGFIANFTFQREYFPTEEDETGAARALMRIQDTYKLDPD 148

  Fly   157 DIAKGLLQRTEFNYRLLFRDCLA---LAYHKFEIGEFKRSLLWFQEALKLSTDGSLEIMNRLKEI 218
            .||||.|..|.:...|...|...   :|||.   |::..::||.|:|||...:|...::|::..:
 Frog   149 VIAKGKLPGTNYISSLSADDSFGMGKIAYHD---GDYYHTVLWMQQALKQMDEGEDAVVNKVDVL 210

  Fly   219 ELKG---FATAVAKRSIYLSNQGLTNETIDDMANSQLQDAKLMDLEQLISSELKQWINDDSTTPP 280
            :...   |......|::.|:.:.|..:...|.|.:.|:..:.|..:|  .:||||  |:.:.|..
 Frog   211 DYLSYTVFQLGDVPRALELTKRLLALDPNHDRAVNNLKYFEKMQEKQ--KAELKQ--NESTNTES 271

  Fly   281 TDHNLG------------------CRG----LFPKKS-NLVCRY-NSSTNAFLKLAPLKMEEISR 321
            .....|                  |||    :.|::. .|.||| |.:.:.:|.|:|:|:|:...
 Frog   272 ATRQPGVYSRPLDYLPERDVYEALCRGEGVKMNPRRQRRLFCRYHNGNRSPYLILSPVKVEDEWD 336

  Fly   322 DPYIVMFHEVISDKDIEEMKGEITEMENGWTSLGDPKE--------IVSRVYWIRK-ESSFSKRI 377
            .|.||.:...:||::|.::| |:.:.:....::.|||.        .||:..|:.: :.....|:
 Frog   337 SPRIVRYLNALSDEEIAKIK-ELAKPKLARATVRDPKTGVLSVANYRVSKSAWLEENDDPVIARV 400

  Fly   378 NQRISDMTGFKLEEFPAIQLANFGVGGYFKPHYDFYTDRLKEVDVNNTL--GDRIGSIIFYAGEV 440
            |.|:..:||..::....:|:||:|:||.::||:||  .|..|.||...|  |:|:.:.:.|..:|
 Frog   401 NLRMQAITGLTVDTAELLQVANYGMGGQYEPHFDF--SRKDEPDVFKRLGTGNRVATFLNYMSDV 463

  Fly   441 SQGGQTVFPDLKVAVEPKKGNALFWFNAFDDSTPDPRSLHSVCPVLVGSRWTITKWLHYAPQLFV 505
            ..||.|||||...|:.||||.|:||:|.|.....|.|:.|:.|||||||:|...||.|...|.|:
 Frog   464 EAGGATVFPDFGAAIWPKKGTAVFWYNLFRSGEGDYRTRHAACPVLVGSKWVSNKWFHERGQEFL 528

  Fly   506 KPC 508
            :||
 Frog   529 RPC 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18233NP_649044.3 P4Ha_N 34..163 CDD:285528 30/135 (22%)
ATP-synt_B <198..278 CDD:304375 20/82 (24%)
P4Hc 333..498 CDD:214780 65/175 (37%)
p4ha2XP_012814344.2 P4Ha_N 27..113 CDD:400573 17/93 (18%)
TPR repeat 166..201 CDD:276809 12/37 (32%)
TPR repeat 206..236 CDD:276809 4/29 (14%)
P4Hc 348..521 CDD:214780 65/175 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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