DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18234 and AT4G35820

DIOPT Version :10

Sequence 1:NP_649043.3 Gene:CG18234 / 40024 FlyBaseID:FBgn0265268 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_195307.1 Gene:AT4G35820 / 829736 AraportID:AT4G35820 Length:272 Species:Arabidopsis thaliana


Alignment Length:180 Identity:36/180 - (20%)
Similarity:73/180 - (40%) Gaps:41/180 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 VETLSLKPHIVLYHDVI--------YDSEISKVKNISLPSL-KSPLR-ILYAIDYNLKFAK---- 359
            :|.::.:|...:||:.:        .:.|...:.:::.||: :|.:| .|..:........    
plant    88 LEVITKEPRAFVYHNFLALFFKICKTNEECDHLISLAKPSMARSKVRNALTGLGEESSSRTSSGT 152

  Fly   360 -IREDHQ---SPLSLRIKDMTGEDVQEDTDFQIDNYGICGFRNFHTDNIELQDQTAELGDRLTSI 420
             ||..|.   ..:..||.:.|....:.....|:.||.:......|.|..:          |:.::
plant   153 FIRSGHDKIVKEIEKRISEFTFIPQENGETLQVINYEVGQKFEPHFDGFQ----------RIATV 207

  Fly   421 MFFMNDVAQGGALAFPNL-------NLTIWPQKGSALV-WRNLDHRMQPN 462
            :.:::||.:||...||..       .:::.|:||.||: |     .|:|:
plant   208 LMYLSDVDKGGETVFPEAKGIKSKKGVSVRPKKGDALLFW-----SMRPD 252

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18234NP_649043.3 P4Ha_N 27..159 CDD:462433
P4Hc <371..485 CDD:214780 23/100 (23%)
AT4G35820NP_195307.1 Retrotran_gag_2 <3..>64 CDD:464108
PLN00052 76..>262 CDD:177683 36/180 (20%)
Blue background indicates that the domain is not in the aligned region.

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