DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG18234 and p4ha1b

DIOPT Version :9

Sequence 1:NP_649043.3 Gene:CG18234 / 40024 FlyBaseID:FBgn0265268 Length:515 Species:Drosophila melanogaster
Sequence 2:NP_999856.1 Gene:p4ha1b / 100003675 ZFINID:ZDB-GENE-030131-4089 Length:536 Species:Danio rerio


Alignment Length:528 Identity:140/528 - (26%)
Similarity:240/528 - (45%) Gaps:80/528 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 SIAGMKELVDLEGFFISEMESYTAALKNKIDLMESLLQEVQSKREISRRNPEEFVAHPLNAFSLI 91
            |...|.:|:..|...::.::.|....:|:::.::....::.|....:.::||.|:.||:|||.|:
Zfish    24 STGQMTDLLYAEKDLVTSLKEYIKQEENRLEQVKEWADKLDSLTITATQDPEGFLGHPVNAFKLM 88

  Fly    92 RRLHEDWTQAELLMLNQVGLEHLQAIETGLEEAQPSDNDLNDAIGGIISLQQFYNLQPSDIANGL 156
            :||:.:|:..|.|:|.......:..: |...:..|:|.|...|...::.||..|.|..:.|::|.
Zfish    89 KRLNSEWSDLENLVLKDTTNGFISNL-TVQRQYFPTDEDQTGAAKALLRLQDTYQLSANAISSGD 152

  Fly   157 LMGQQYNASLTTLNCQALANACMNFNYDKYALN-WFKAAVDHYNDDRDGQVYR-EVFDFRLPDLY 219
            |.|..:.:.:|..:|..|.....: :.|.|... |...|:...::..:..:.: .|.|      |
Zfish   153 LPGVVHKSRMTVEDCYELGKIAYS-DADYYHTELWMAQALSQLDEGEESPIDKVTVMD------Y 210

  Fly   220 INYTSVLVTKGFRKAAWKVLQDVADLDAT--------------LWLLRKDIYE---------VGK 261
            ::|  .:..:|....|.::.:.:..||..              |...||...|         :.|
Zfish   211 LSY--AIYQQGELDRALELTKRMLKLDPNHHRANGNLKYFEFQLEKQRKAENEKKEEDQKRVLDK 273

  Fly   262 IDV-----PDPT--------------FIITPWFDVTGCLRVGQTSQHLSCHYEKNT-SEFLRIAP 306
            .|.     .||.              ..:||           :....|.|.|..|. :..|.:||
Zfish   274 RDAQRKRSKDPLPERKKYERLCRGEGIKLTP-----------RRQSRLFCRYSNNNRNPRLLLAP 327

  Fly   307 LKVETLSLKPHIVLYHDVIYDSEISKVKNISLPSLK-----SPLR-ILYAIDYNL-KFAKIREDH 364
            :|.|....:|.||.||::|.||||..||.::.|.|:     :|:. :|....|.: |.|.:....
Zfish   328 VKQEDEWDRPRIVRYHEIISDSEIETVKEMAKPRLRRATISNPITGVLETAPYRISKSAWLSGYE 392

  Fly   365 QSP---LSLRIKDMTGEDVQEDTDFQIDNYGICGFRNFHTD--NIELQDQTAEL--GDRLTSIMF 422
            .|.   ::.||:|:||.::....:.|:.|||:.|....|.|  ..:..|...||  |:|:.:.:|
Zfish   393 HSTIERINQRIEDVTGLEMDTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATWLF 457

  Fly   423 FMNDVAQGGALAFPNLNLTIWPQKGSALVWRNLDHRMQPNQDLLHVSCPVVVGSKWTLVKWLHER 487
            :|:||:.|||..|.::...:||:||:|:.|.||....:.:....|.:|||:||:||...||:|||
Zfish   458 YMSDVSAGGATVFTDVGAAVWPKKGTAVFWYNLFPSGEGDYSTRHAACPVLVGNKWVSNKWIHER 522

  Fly   488 PQMFSRPC 495
            .|.|.|||
Zfish   523 GQEFRRPC 530

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG18234NP_649043.3 P4Ha_N 27..157 CDD:285528 33/129 (26%)
P4Hc <371..485 CDD:214780 43/117 (37%)
p4ha1bNP_999856.1 P4Ha_N 24..153 CDD:285528 33/129 (26%)
TPR repeat 164..199 CDD:276809 6/35 (17%)
TPR_16 168..238 CDD:290168 13/78 (17%)
TPR repeat 204..234 CDD:276809 6/37 (16%)
P4Hc 347..520 CDD:214780 57/172 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1591
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D192165at33208
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X129
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.920

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