DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4174 and dpy-18

DIOPT Version :9

Sequence 1:NP_001034031.2 Gene:CG4174 / 40023 FlyBaseID:FBgn0036793 Length:473 Species:Drosophila melanogaster
Sequence 2:NP_499464.1 Gene:dpy-18 / 176569 WormBaseID:WBGene00001077 Length:559 Species:Caenorhabditis elegans


Alignment Length:532 Identity:120/532 - (22%)
Similarity:211/532 - (39%) Gaps:95/532 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 VVVTACLGFQVKGEVVSAPESYDFAISSESQLSLLKLKETHVNN----LQSYKKVLKKHLQKIRR 66
            ::|.|.:|:.|.....|..:..:..   |::.::.|:.:.::::    |...||:.:::.:|...
 Worm     5 LLVLATIGYAVADLFTSIADMQNLL---ETERNIPKILDKYIHDEEERLVQLKKLSEEYSKKNEI 66

  Fly    67 AIRQSEELLKSTKTSPRNLIYGYKVLRHLHNDWPQYFRLLKKDLGLEQIAVSQMLLT------QQ 125
            :|   |..||.. |:|.|   .:.:::....||.:    ::..:...:.......:|      :.
 Worm    67 SI---ENGLKDI-TNPIN---AFLLIKRKIFDWKE----IESKMNANKAGNVVSSITDDSYGVRY 120

  Fly   126 PTSVDFEESMGAMHRLQTVYNLDSYAMTEGFIDDKDKNIRNWSADECLMLGLMYLFLKDYNQSEN 190
            ||:.|...:...:.|||..|.||:..:.:|.| ..|:....:||.:|..:........|:..:..
 Worm   121 PTADDLSGAAIGLLRLQDTYRLDTKDLADGKI-YADQGNYTFSAKDCFEIARAAYNEHDFYHTVM 184

  Fly   191 WLELALYHYDDNVSPEVLKIKLWNYPNLLESLVEANKGLGHYFEAKKYANELLSINPNHTYMLTQ 255
            |:|.|.....|.|.|.|      ...::||.|..|.....:...|.|...||..:||.|      
 Worm   185 WMEEAQRRLGDEVEPTV------EVEDILEYLAFALYKQNNLKHALKLTEELYKMNPTH------ 237

  Fly   256 LPKLK------------------HLQSN--PAKLTKPKKVF-----QLQKEICSKRY---RRKSG 292
             |:.|                  .::.|  |.:..:|..|.     .:.:.:|....   ::...
 Worm   238 -PRAKGNVKWYEDLLEQEGVRRSDMRKNLPPIQNRRPDSVLGNTERTMYEALCRNEVPVSQKDIS 301

  Fly   293 VLVCRYVDWTPFLKLAPLKMEELSMKPYISIFYGFLGQKDIEVLKNVSRPKLQRI---EHLSGNC 354
            .|.|.|....|||..||:|:|.....|...:|...:...::..::.:::|||.|.   :.::|..
 Worm   302 RLYCYYKRDRPFLVYAPIKVEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKL 366

  Fly   355 SCKIGNLSTSL------HDVVRKVNELILGITGFPLKGNQMLEVINYGIAGNYNP-------EEP 406
            ......:|.|.      .|||..||:.|..:|...::..:.|::.||||.|:|:|       ||.
 Worm   367 VTATYRISKSAWLKEWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEES 431

  Fly   407 KIHNK-------ANAFIFLSNAGKGGEIVFPSRHLKVRPRKGSMLVWENLKK------SLIYHQC 458
            |....       |....::|....||..||......:.|.|...|.|.||.|      ...:..|
 Worm   432 KSFESLGTGNRIATVLFYMSQPSHGGGTVFTEAKSTILPTKNDALFWYNLYKQGDGNPDTRHAAC 496

  Fly   459 PILKGNMWVANK 470
            |:|.|..||:||
 Worm   497 PVLVGIKWVSNK 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4174NP_001034031.2 P4Ha_N 33..157 CDD:285528 26/133 (20%)
TPR repeat 169..197 CDD:276809 6/27 (22%)
TPR repeat 202..245 CDD:276809 11/42 (26%)
2OG-FeII_Oxy <362..470 CDD:304390 39/133 (29%)
dpy-18NP_499464.1 P4Ha_N 21..152 CDD:285528 27/144 (19%)
P4Hc 338..511 CDD:214780 46/171 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000199
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10869
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.