DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AstC-R1 and AstA-R1

DIOPT Version :10

Sequence 1:NP_649040.2 Gene:AstC-R1 / 40020 FlyBaseID:FBgn0036790 Length:483 Species:Drosophila melanogaster
Sequence 2:NP_524700.1 Gene:AstA-R1 / 44126 FlyBaseID:FBgn0266429 Length:394 Species:Drosophila melanogaster


Alignment Length:448 Identity:125/448 - (27%)
Similarity:194/448 - (43%) Gaps:106/448 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 GEMTADSEANATNWYNTNESLYTTELNHRWISGSSTIQPEESLYGTDLPTYQHCIATRNSFADLF 79
            |.:.:.|.::..|:..|:|  :|...:|   :.:.:::     |..:....:..::|       .
  Fly    29 GSIISVSNSSGNNYAFTSE--HTDHSDH---NANDSME-----YDAESVALERIVST-------I 76

  Fly    80 TVVLYGFVCIIGLFGNTLVIYVVLRFSKMQTVTNIYILNLAVADECFLI-GIPFLLYTMRICSWR 143
            ..|.:|.:...||.||.|||.||:...:|::.||:.|:||||:|..|:| .:||......:..|.
  Fly    77 VPVFFGIIGFAGLLGNGLVILVVVANQQMRSTTNLLIINLAVSDILFVIFCVPFTATDYVLPEWP 141

  Fly   144 FGEFMCKAYMVSTSITSFTSSIFLLIMSADRYIAVCHPISSPRYRTLHIAKVVSAIAWSTSAVLM 208
            ||...||.......:|...|...|::||.||::||.||::|...||...|.:....||.|.....
  Fly   142 FGNVWCKFVQYMIVVTCHCSVYTLVLMSFDRFLAVVHPVTSMSLRTERNATLAIMCAWITIVTTA 206

  Fly   209 LPVILYASTVEQEDGINYSCNIMWPDAYKKHSGTTFILYT-------------FFL-GFATPLCF 259
            :||.|           ::|..|.   .|..::||..:..|             ||| .:..||..
  Fly   207 IPVAL-----------SHSVRIY---QYHGNAGTACVFSTEEEIWSLVGFQVSFFLSSYVAPLTL 257

  Fly   260 ILSFYYLVIRKLRSVGP--KPGTKSKEKRRAHRKVTRLVLTVISVYILCWLPHWISQVALIHSNP 322
            |...|..::.:|....|  ||   |.|.|:..|:|||:|:.|:..:.:||||        ||...
  Fly   258 ICFLYMGMLARLWKSAPGCKP---SAESRKGKRRVTRMVVVVVLAFAICWLP--------IHVIL 311

  Fly   323 AQRDL-----SRLEILIFLLLGALVYSNSAVNPILYAFLSENFRKSFFKAFTCMNKQDINAQLQL 382
            ..:.|     |.|.::|.::...:.|:||.:|||||||||:||||:|.|...|            
  Fly   312 VLKALNLYGGSHLSVIIQIISHVVAYTNSCINPILYAFLSDNFRKAFRKVVWC------------ 364

  Fly   383 EPSVFTKQGSKKRGGSKRLLTSNPQIPPLLPLNAGNNNSSTTTSSTTTAEKTGTTGTQ 440
                          ||...|.:|.|:                |.:|.||...||:..:
  Fly   365 --------------GSPPPLMTNQQV----------------TKTTRTATGNGTSNIE 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R1NP_649040.2 7tmA_AstC_insect 78..364 CDD:320222 102/307 (33%)
TM helix 1 79..105 CDD:320222 11/25 (44%)
TM helix 2 112..138 CDD:320222 12/26 (46%)
TM helix 3 149..179 CDD:320222 10/29 (34%)
TM helix 4 191..213 CDD:320222 6/21 (29%)
TM helix 5 241..270 CDD:320222 10/42 (24%)
TM helix 6 287..317 CDD:320222 10/29 (34%)
TM helix 7 332..357 CDD:320222 11/24 (46%)
AstA-R1NP_524700.1 7tmA_AstA_R_insect 75..358 CDD:320224 103/314 (33%)
TM helix 1 76..102 CDD:320224 11/25 (44%)
TM helix 2 109..135 CDD:320224 12/25 (48%)
TM helix 3 147..177 CDD:320224 10/29 (34%)
TM helix 4 189..209 CDD:320224 4/19 (21%)
TM helix 5 239..268 CDD:320224 7/28 (25%)
TM helix 6 284..314 CDD:320224 12/37 (32%)
TM helix 7 326..351 CDD:320224 11/24 (46%)

Return to query results.
Submit another query.