DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AstC-R2 and Ccr9

DIOPT Version :9

Sequence 1:NP_001303398.1 Gene:AstC-R2 / 40019 FlyBaseID:FBgn0036789 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_758832.1 Gene:Ccr9 / 282832 RGDID:628750 Length:369 Species:Rattus norvegicus


Alignment Length:372 Identity:96/372 - (25%)
Similarity:174/372 - (46%) Gaps:50/372 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 ITPTEQLAVAPNGTTLHQLESVES-ESYPSINGTQNETMVTSVRPHLDHRNRPTQQNGSHYLEYD 130
            :||||..::.|.....:..:|..| :.|.::|.:.......:||           |..||:|   
  Rat     1 MTPTEFTSLIPGMFDDYSYDSTASTDDYMNLNFSSFFCKKNNVR-----------QFASHFL--- 51

  Fly   131 DDGPDCSYSYNFILKLITMILYALVCIIGLFGNTLVIYVVMRFSKMQTVTNIYILNLAIADECFL 195
               |.               ||.||.::|..||:|||.|....::::|:|::::|||||||..||
  Rat    52 ---PP---------------LYWLVFVVGTVGNSLVILVYWYCTRVKTMTDMFLLNLAIADLLFL 98

  Fly   196 IGIPFLLYTMQVGNWPFGNYMCKAYMVSTSITSFTSSIFLLIMSADRYIAVCHPISSP--RYRTP 258
            ..:||.... ..|.|.|..:|||.......:..::..:.::.:|.|||||:...:.:.  |.:..
  Rat    99 ATLPFWAIA-AAGQWMFQTFMCKVVNSMYKMNFYSCVLLIMCISVDRYIAIVQAMKAQVWRQKRL 162

  Fly   259 FVSKLVSAFAWMTSVLLMLPVILFASTVQSSNGNVSCNIEWPDTQNSHTDSTFILYSLVLGFATP 323
            ..||:|....|:.:.:|..|.||: |.:...:|...|.:.:|..:|:...|..::..:.|||..|
  Rat   163 LYSKMVCITIWVMAAVLCTPEILY-SQISGESGIAICTMVYPKDKNAKLKSAVLILKVTLGFFLP 226

  Fly   324 LTFILVFYCLVIRKLHTVGPKHKSKEKKRSHRKVTKLVLTVISAYIFCWLPH----WISQVALIS 384
              |:::.:|..| .:||:     .:.||.|..|..|:.:||::.:|....|:    .:..|...:
  Rat   227 --FMVMAFCYTI-IIHTL-----VQAKKSSKHKALKVTITVLTVFIMSQFPYNCILVVQAVDAYT 283

  Fly   385 SAPQRCASRLELAV-FLACGCLSYSNSAMNPILYAFLSDNFKKSFMK 430
            .....|.....:.: |.....:::.:|.:||:||.|:.:.|::..:|
  Rat   284 MFISNCTISTNIDICFQVTQTIAFFHSCLNPVLYVFVGERFRRDLVK 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R2NP_001303398.1 7tm_4 156..>372 CDD:304433 64/217 (29%)
7tm_1 162..417 CDD:278431 70/261 (27%)
Ccr9NP_758832.1 7tm_1 65..317 CDD:278431 70/261 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.