DRSC/TRiP Functional Genomics Resources

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Protein Alignment AstC-R2 and npr-26

DIOPT Version :10

Sequence 1:NP_001303398.1 Gene:AstC-R2 / 40019 FlyBaseID:FBgn0036789 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001299957.1 Gene:npr-26 / 24104836 WormBaseID:WBGene00011372 Length:461 Species:Caenorhabditis elegans


Alignment Length:522 Identity:125/522 - (23%)
Similarity:200/522 - (38%) Gaps:130/522 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 TPTEQLAVAPNGTTLHQLESVESESY--------PSINGTQNETMVTSVRPHLDHRNRPTQQNGS 124
            ||..|..:......|....|.|.|.|        .|||.|..:                .|.:|.
 Worm    13 TPPPQQPLQQKSLFLKMDASTEFEIYREHYSRVMASINATMCQ----------------EQPDGI 61

  Fly   125 HYLEYDDDGPDCSYS-YNFILK-----LITMILYALVCIIGLFGNTLVIYVV--------MRFSK 175
            .|......||....: |..|.:     ||.::::.|..|:|:.||:.:|.::        .|..:
 Worm    62 LYCPNHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITIIRGVVEDRRKRMKR 126

  Fly   176 MQTVTNIYILNLAIADECFLIGIPFLLYTMQVGNWPFGNYMCKAYMVSTSITSFTSSIFLLIMSA 240
            ......:||..|.:.|....:.:|..:....:|.|.||..|||.:.|..|:....|:..:..||.
 Worm   127 HGDNAILYIGALCVCDFVMSLSLPPAILDSVIGFWIFGTTMCKVHHVFGSVGRIASTFLITAMSF 191

  Fly   241 DRYIAVCHPISSPRYRTPFVSKLVSAFAWMTSV--LLMLPVILFAS----TVQSSNGNVSCNIE- 298
            |||:|||:|   ..:|....:.::|..|.::|:  :|:||::.:||    .:.....:.|.||. 
 Worm   192 DRYVAVCYP---HHHRLRSRTFVISTIACLSSIAFVLLLPMLTYASAKEMVLHELKAHESANITR 253

  Fly   299 ----------------WPDTQNSHTDSTFILYSLVLGFATPLTFILVFYCLVIRKLHTVGPKHKS 347
                            |      .|.:|||     ||:..||..|:.|...:|.||:.    || 
 Worm   254 VRVFKCSDMMPGPIFYW------FTSTTFI-----LGYVVPLILIVYFNLKLINKLYA----HK- 302

  Fly   348 KEKKRSH---RKVTKLVLTVISAYIFCWLPHWISQV-ALISSAPQRCASRLELAVFLACGC---L 405
            :...||.   |:|....:.:.:.|..||.|:|.|.: |:|.|...:..:..|..:| |..|   |
 Worm   303 RVLPRSAIPVRRVVVYTVLIAAVYFVCWTPYWFSVLYAIIMSLLGKPTTNSEWVLF-AIYCVHLL 366

  Fly   406 SYSNSAMNPILYAFLSDNFKKSFMKACTCAARKDVNAQLQLENSFFPKFGKGRQSERLLGGNGKG 470
            .|..|:.|.|||..|                    |.|||::|..      |...:.::..||..
 Worm   367 PYFGSSSNWILYGLL--------------------NTQLQMKNDI------GDDGQSIMTTNGVQ 405

  Fly   471 GAQRGALTKKKCLATRNNNAPMATTTTTTTTTTGTDAVTCLQPPVHQVPAEIQVGNPATVLVVNA 535
            ...|.:.::..|.|...::..:.|..|                |:.|..:.:..||..|.:|...
 Worm   406 DLPRRSTSRLICDAGATSSRSIPTNNT----------------PLWQNDSTLTRGNSDTSMVFYQ 454

  Fly   536 ET 537
            :|
 Worm   455 DT 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R2NP_001303398.1 7tmA_AstC_insect 146..428 CDD:320222 86/319 (27%)
TM helix 1 147..173 CDD:320222 7/33 (21%)
TM helix 2 180..206 CDD:320222 5/25 (20%)
TM helix 3 217..247 CDD:320222 11/29 (38%)
TM helix 4 259..281 CDD:320222 6/23 (26%)
TM helix 5 308..337 CDD:320222 10/28 (36%)
TM helix 6 352..382 CDD:320222 10/33 (30%)
TM helix 7 396..421 CDD:320222 10/27 (37%)
npr-26NP_001299957.1 7tm_classA_rhodopsin-like 102..382 CDD:410626 82/319 (26%)
TM helix 2 128..156 CDD:410626 5/27 (19%)
TM helix 3 168..198 CDD:410626 11/29 (38%)
TM helix 4 210..229 CDD:410626 5/18 (28%)
TM helix 5 268..293 CDD:410626 11/35 (31%)
TM helix 6 313..343 CDD:410626 9/29 (31%)
TM helix 7 354..382 CDD:410626 12/48 (25%)

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