DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AstC-R2 and npr-24

DIOPT Version :9

Sequence 1:NP_001303398.1 Gene:AstC-R2 / 40019 FlyBaseID:FBgn0036789 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_510833.3 Gene:npr-24 / 187897 WormBaseID:WBGene00020086 Length:373 Species:Caenorhabditis elegans


Alignment Length:343 Identity:114/343 - (33%)
Similarity:176/343 - (51%) Gaps:44/343 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 LKLITMILYALVCIIGLFGNTLVIYVVMRFSKMQTVTNIYILNLAIADECFLIGIPFLLYTMQV- 207
            :|.:..:.:.|..:||:..|..|:..::.|..|:|::||||.|||:||..||.|||..|:.... 
 Worm    17 IKTVAHLTWCLTALIGIPANLFVLAAIVYFRDMRTISNIYIFNLAVADLLFLCGIPVSLFAQSSH 81

  Fly   208 GNWPFGNYMCKAYMVSTSITSFTSSIFLLIMSADRYIAVCHPISSPRYRTPFVSKLVSAFAWMTS 272
            ..|.:|..|||.|:...:::.|.|::|:.|:|.|||:|||.||.|..:||...:..:|..||:..
 Worm    82 DGWIWGPIMCKLYISGNAVSQFASAVFIAILSFDRYLAVCRPIQSKSFRTTQAAFALSVAAWIMV 146

  Fly   273 VLLMLPVILFASTVQSSN-------------GNVS---CNIEWPDTQNSHTDST-------FILY 314
            :|.|.|:.||...::||:             |||:   ...|..:|..:..:..       ||.|
 Worm   147 ILEMTPLFLFVKLIKSSSAGEARGGSCMLFVGNVTVLESATEMNETLLNEIEQNMLASRRFFISY 211

  Fly   315 SLVLGFATPLTFILVFYCLVIRKLHTVGPKHKSKE---KKRSHRKVTKLVLTVISAYIFCWLPHW 376
            :..|.:..||..:..||..:|.|:.....:.::|.   |||: .|||.:.|.::.:|..||||.|
 Worm   212 TFALSYLIPLVAVWYFYFKIILKMCQRKRQMQTKRTATKKRT-TKVTIMGLAIVISYTHCWLPFW 275

  Fly   377 ISQVALISSAPQRCASRLELAVFLACGC------LSYSNSAMNPILYAFLSDNFKKSFMKACTCA 435
            |.|.::.       |:..|.:.:|...|      |.|.|||.||.||.||||:|:|:..|... .
 Worm   276 IVQWSIE-------ANLFEKSKYLLFCCTHFAFALQYINSAANPFLYVFLSDSFQKNIQKLLR-T 332

  Fly   436 ARKDVNAQLQLENSFFPK 453
            |:.|  .|:.|:||..|:
 Worm   333 AKPD--KQIMLKNSTDPQ 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R2NP_001303398.1 7tm_4 156..>372 CDD:304433 78/242 (32%)
7tm_1 162..417 CDD:278431 94/287 (33%)
npr-24NP_510833.3 7tm_GPCRs 25..326 CDD:391938 105/308 (34%)
TM helix 1 25..46 CDD:341315 5/20 (25%)
TM helix 2 53..80 CDD:341315 15/26 (58%)
TM helix 3 91..121 CDD:341315 12/29 (41%)
TM helix 4 133..155 CDD:341315 6/21 (29%)
TM helix 5 185..234 CDD:341315 11/48 (23%)
TM helix 6 251..281 CDD:341315 14/30 (47%)
TM helix 7 293..319 CDD:341315 11/25 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 146 1.000 Domainoid score I2791
eggNOG 1 0.900 - - E33208_3BCR0
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 173 1.000 Inparanoid score I2721
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000463
OrthoInspector 1 1.000 - - otm14276
orthoMCL 1 0.900 - - OOG6_107077
Panther 1 1.100 - - LDO PTHR24229
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3938
SonicParanoid 1 1.000 - - X22
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.850

Return to query results.
Submit another query.