DRSC/TRiP Functional Genomics Resources

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Protein Alignment AstC-R2 and npr-30

DIOPT Version :9

Sequence 1:NP_001303398.1 Gene:AstC-R2 / 40019 FlyBaseID:FBgn0036789 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001367700.1 Gene:npr-30 / 186719 WormBaseID:WBGene00019183 Length:396 Species:Caenorhabditis elegans


Alignment Length:329 Identity:69/329 - (20%)
Similarity:125/329 - (37%) Gaps:68/329 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   152 YALVCIIGLFGNTLV---IYVVMRFSKMQTVTN---IYILNLAIADECFLIGIPFLLYTMQVGNW 210
            |..|.:.|..||..|   :.:|..|.|...|..   :.||.:.:||...|:.:...::......|
 Worm    25 YITVILFGNIGNVWVSWKVGIVFVFDKSSLVPRNIVMLILFICVADLLVLLHLTLFVHFQFEKQW 89

  Fly   211 PFGNYMCKAYMVSTSITSFTSSIFLLIMSADRYIAV---CHPISSPRYRT-PFVSKLVSAFAWMT 271
            .|||.:||::.....:......:.||.:|.:.|.:|   .|..|..|... ..|.:|.|..|.:.
 Worm    90 IFGNIVCKSFYCIEVVNKLIIPLALLRISRESYESVRMTSHKCSKKRRSIWNIVFQLYSVMALIA 154

  Fly   272 SVLLMLPVILFASTVQ---SSNGNVS----CNIEWPDTQNSHTDS-TFILYSLVLGFATPLTFIL 328
            ..:|.:.|::||.|..   ..:|.::    |....|     |..: .|.:.:.|.|:.......:
 Worm   155 VGVLTISVLIFAETRTYEIPRHGELTAVTMCIFHPP-----HPYAMVFNILAFVFGYGFTSAAYM 214

  Fly   329 VFYC---LVIRKLHTVGPKHKSKEKKRSHRKVTKLVLTV---ISAYIFCWLPHW----------- 376
            .||.   :::::.::......|...:.:|:.:.|:..||   :..|:.||.|:|           
 Worm   215 YFYLRVPMILKRRYSSIKTTSSNSTRFNHQSILKIRHTVNAFVVVYMACWTPYWALFWLFFTFPP 279

  Fly   377 -------ISQVALISSAPQRCASRLELAVFLACGCLSYSNSAMNPILYAFLSDNFKKSFMKACTC 434
                   |||:|.:                     |.|.:.|..||:..|::...:.:.....|.
 Worm   280 SNNWMVIISQMAHL---------------------LPYISCAAYPIILTFINKGIRNAHSTIMTS 323

  Fly   435 AARK 438
            ..:|
 Worm   324 QRKK 327

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R2NP_001303398.1 7tm_4 156..>372 CDD:304433 51/239 (21%)
7tm_1 162..417 CDD:278431 63/296 (21%)
npr-30NP_001367700.1 7tm_classA_rhodopsin-like 21..310 CDD:410626 67/310 (22%)
TM helix 1 21..49 CDD:410626 7/23 (30%)
TM helix 2 58..81 CDD:410626 5/22 (23%)
TM helix 3 97..119 CDD:410626 3/21 (14%)
TM helix 4 140..164 CDD:410626 6/23 (26%)
TM helix 5 195..218 CDD:410626 4/22 (18%)
TM helix 6 252..272 CDD:410626 7/19 (37%)
TM helix 7 285..310 CDD:410626 10/45 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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