DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AstC-R2 and npr-18

DIOPT Version :9

Sequence 1:NP_001303398.1 Gene:AstC-R2 / 40019 FlyBaseID:FBgn0036789 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_001257085.1 Gene:npr-18 / 183408 WormBaseID:WBGene00008065 Length:476 Species:Caenorhabditis elegans


Alignment Length:519 Identity:123/519 - (23%)
Similarity:187/519 - (36%) Gaps:144/519 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 LITPTEQLAV---APNGTTLHQLESVESESYPSINGTQNETMVTSVRPHLDHRNRPTQQNGSHYL 127
            ||:..||:.:   |....|:.|.::.:...|      :|.|:|.:: |..:|.|..         
 Worm    11 LISDGEQMRIDTYAVGRKTMQQSDAFKGTFY------ENFTLVYAL-PLSNHDNSS--------- 59

  Fly   128 EYDDDGPDCSYSYNFILKLITMILYALVCIIGLFGNTLVIYVVMRFS-----KMQTVTNIYILNL 187
                            |.||.. .|||:.:.|..||..::.||....     .....|..||..|
 Worm    60 ----------------LMLIAG-FYALLFMFGTCGNAAILAVVHHVKGQDPRSRHNTTLTYICIL 107

  Fly   188 AIADECFLIGIPFLLYTMQVGNWPFGNYMCKAYMVSTSITSFTSSIFLLIMSADRYIAVCHP--I 250
            :|.|...::.||..:....:|.|.|..:.||.:.:...|....|:..|:..|.|||.|||||  :
 Worm   108 SIVDFLSMLPIPMTIIDQILGFWMFDTFACKLFRLLEHIGKIFSTFILVAFSIDRYCAVCHPLQV 172

  Fly   251 SSPRYRTPFVSKLVSAFAWMTSVLLMLPVILFAST---VQSSNGNVSCNI-------EWPDTQNS 305
            .....||.||  .:....::|.|:|. |::|:|.:   |.....::...:       :..|....
 Worm   173 RVRNQRTVFV--FLGIMFFVTCVMLS-PILLYAHSKELVMHEKVDLDQEVITRMHLYKCVDDLGR 234

  Fly   306 HTDSTFILYSLVLGFATPLTFILVFYC-LVIR--------KLHTVGPKHKSKEKKRS----HRKV 357
            .....|.|||.||.:..||.|::.||. ::||        |...||.:...:|||.:    |  :
 Worm   235 ELFVVFTLYSFVLAYLMPLLFMIYFYYEMLIRLFKQANVIKQTLVGRRSGGEEKKLTIPVGH--I 297

  Fly   358 TKLVLTVISAYIFCWLPHWIS----------QVALISSAPQRCASRLELAVFLACG--CLSYSNS 410
            ....|.:.|.:..||.|:|||          |....:::|...|     .::...|  .|.|.||
 Worm   298 AIYTLAICSFHFICWTPYWISILYSLYEELYQDTKSTASPPTYA-----FIYFMYGVHALPYINS 357

  Fly   411 AMNPILYAFLSDNFKKSFMKACTCAARKDVNAQLQLENSFFPKFGKGRQSERLLGGNGKGGAQRG 475
            |.|.|||..|:                      .||.|:          .||....||.||.|..
 Worm   358 ASNFILYGLLN----------------------RQLHNA----------PERKYTRNGVGGRQMS 390

  Fly   476 ---------------ALTKKKC---------LATRNNNAPMATTTTTTTTTTGTDAVTCLQPPV 515
                           |:....|         :...|||..........:..|..|:.|.:..|:
 Worm   391 HALTTNTRPEYSELIAIPSSSCRPDSRVSAMIHNNNNNTESLPLAQNISNMTNKDSATIVPMPM 454

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R2NP_001303398.1 7tm_4 156..>372 CDD:304433 64/245 (26%)
7tm_1 162..417 CDD:278431 80/296 (27%)
npr-18NP_001257085.1 7tm_classA_rhodopsin-like 63..368 CDD:381740 87/315 (28%)
TM helix 1 63..87 CDD:381740 9/24 (38%)
TM helix 2 101..122 CDD:381740 7/20 (35%)
TM helix 3 138..160 CDD:381740 4/21 (19%)
TM helix 4 182..198 CDD:381740 4/18 (22%)
TM helix 5 238..261 CDD:381740 10/22 (45%)
TM helix 6 291..320 CDD:381740 9/30 (30%)
TM helix 7 343..368 CDD:381740 10/24 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24229
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X22
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.