DRSC/TRiP Functional Genomics Resources

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Protein Alignment AstC-R2 and Ltb4r1

DIOPT Version :9

Sequence 1:NP_001303398.1 Gene:AstC-R2 / 40019 FlyBaseID:FBgn0036789 Length:593 Species:Drosophila melanogaster
Sequence 2:NP_032545.1 Gene:Ltb4r1 / 16995 MGIID:1309472 Length:351 Species:Mus musculus


Alignment Length:289 Identity:86/289 - (29%)
Similarity:153/289 - (52%) Gaps:35/289 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 LKLITMILYALVCIIGLFGNTLVIYVVMRFSKMQTVTNIYILNLAIADECFLIGIPFLLYTMQVG 208
            |.|:.::|.::...:||.||:.|::.:::..:.:|||.:.:||||:||...|:..||.|:.:..|
Mouse    19 LSLLPIVLLSVALAVGLPGNSFVVWSILKRMQKRTVTALLVLNLALADLAVLLTAPFFLHFLARG 83

  Fly   209 NWPFGNYMCKAYMVSTSITSFTSSIFLLIMSADRYIAVCHPISSPRYRTPFVSKLVSAFAWMTSV 273
            .|.|....|:.......|:.:.|.:.:.|||.||.:||..|..|.:.||...::.|.|..|:.|.
Mouse    84 TWSFREMGCRLCHYVCGISMYASVLLITIMSLDRSLAVARPFMSQKVRTKAFARWVLAGIWVVSF 148

  Fly   274 LLMLPVILFASTVQSSNGNVSCNIEWPDTQNS--HTDSTFILYSLVLGFATPLTFILVFYCLVIR 336
            ||.:||::: .||:.:|..:.|...:|:.::.  |     :|:..:.||..|...::..|..:.|
Mouse   149 LLAIPVLVY-RTVKWNNRTLICAPNYPNKEHKVFH-----LLFEAITGFLLPFLAVVASYSDIGR 207

  Fly   337 KLHTVGPKHKSKEKKRSHRKVTKLVLTVISAYIFCWLPHWISQVALI------------SSAPQR 389
            :|       :::..:|| |:..:||:.:|.|:...|||:.:  |.|:            |.|.||
Mouse   208 RL-------QARRFRRS-RRTGRLVVLIILAFAAFWLPYHL--VNLVEAGRTVAGWDKNSPAGQR 262

  Fly   390 CASRLELAVFLACGCLSYSNSAMNPILYA 418
            .  ||...|.:|   |::.:|::||:|||
Mouse   263 L--RLARYVLIA---LAFLSSSVNPVLYA 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R2NP_001303398.1 7tm_4 156..>372 CDD:304433 63/217 (29%)
7tm_1 162..417 CDD:278431 78/268 (29%)
Ltb4r1NP_032545.1 7tm_1 37..285 CDD:278431 78/268 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 311..351
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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