DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AstC-R2 and mchr2a

DIOPT Version :9

Sequence 1:NP_001303398.1 Gene:AstC-R2 / 40019 FlyBaseID:FBgn0036789 Length:593 Species:Drosophila melanogaster
Sequence 2:XP_001921716.2 Gene:mchr2a / 100150764 ZFINID:ZDB-GENE-100922-121 Length:351 Species:Danio rerio


Alignment Length:379 Identity:103/379 - (27%)
Similarity:177/379 - (46%) Gaps:65/379 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   102 ETMVTSVRPHLDHRNRPTQQNGSHYLEYDDDGPDCSYSYNFILKLITMILYALV---CIIGLFGN 163
            |.:|.:.....|:..|..:....|        |...| ||.:....|.||.|.:   |..||.||
Zfish     9 EPVVWNFTLKFDNGTRANETTAGH--------PADEY-YNIVHVTETKILPAFIGFLCSTGLVGN 64

  Fly   164 TLVIYVVMRFSKMQTVTNIYILNLAIADECFLIGIPFLLYT-MQVGNWPFGNYMCKAYMVSTSIT 227
            .||:..::|.:| :||.::|:.|||:||...:|.:|||::. .:.|:|.||:.:|      |.||
Zfish    65 VLVLVTILRSAK-KTVPDVYVGNLAVADLVHVIVMPFLIHQWARGGHWVFGSSLC------TIIT 122

  Fly   228 SFTS------SIFLLIMSADRYIAVCHPISSPRYRTPFVSKLVSAFAWMTSVLLMLPVILFASTV 286
            |..:      :..:..||.|||:|:.||......||...:..::.|.|..|.:::||..:.|..:
Zfish   123 SLDNCNQVACAAVMTAMSLDRYLALVHPFRLLSLRTRSRTIRINLFVWAASFIMVLPAWVHAKVI 187

  Fly   287 QSSNGNVSCNIE--------WPDTQNSHTDSTFILYSLVLGFATPLTFILVFYCLVIRKLHTVGP 343
            :..:|..||::.        |           :.||..|..|..||..||:.|.|::  .:|   
Zfish   188 RFRDGLESCSLNLVSPKQVLW-----------YTLYQTVTSFFLPLPLILICYILIL--CYT--- 236

  Fly   344 KHKSKEKKRSHR-----------KVTKLVLTVISAYIFCWLPHWISQVALISSAPQRCASRLELA 397
            ....::.|::||           ::||:||.:::.::....|:.|.|  |::.:..|.:......
Zfish   237 WRMYRKNKKAHRYNTSLPRERVVRLTKMVLVLVAVFLVSVGPYHILQ--LVNLSVPRPSLAYHTC 299

  Fly   398 VFLACGCLSYSNSAMNPILYAFLSDNFKKSFMKACTCAARKDVNAQLQLENSFF 451
            .:|:. ||||:.|::||.:|..||.:|:...:...| .:...|..::|...|.|
Zfish   300 YYLSV-CLSYAASSINPFIYILLSGHFRHRLVCRDT-PSMPSVEREIQAPRSSF 351

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AstC-R2NP_001303398.1 7tm_4 156..>372 CDD:304433 68/241 (28%)
7tm_1 162..417 CDD:278431 78/280 (28%)
mchr2aXP_001921716.2 7tm_1 63..318 CDD:278431 78/280 (28%)
7tm_4 <133..>189 CDD:304433 16/55 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
10.960

Return to query results.
Submit another query.