DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMNB1 and lmnb1

DIOPT Version :9

Sequence 1:NP_005564.1 Gene:LMNB1 / 4001 HGNCID:6637 Length:586 Species:Homo sapiens
Sequence 2:NP_989198.1 Gene:lmnb1 / 394806 XenbaseID:XB-GENE-489658 Length:584 Species:Xenopus tropicalis


Alignment Length:587 Identity:444/587 - (75%)
Similarity:514/587 - (87%) Gaps:4/587 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MATATPVPPRMGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVT 65
            ||||||..||...|.....|||||||:||||||.:|:|||||||||||||||||:|||.|.:|||
 Frog     1 MATATPSGPRSSGRRSSMNTPLSPTRISRLQEKVDLQELNDRLAVYIDKVRSLESENSLLHVQVT 65

Human    66 EREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLNYAKKESDLNG 130
            ||||||.||::|:|.|||||||||||:|||||||||:||:||.|...||:.|..:::||||:|..
 Frog    66 EREEVRSREVSGIKELYETELADARRSLDDTARERARLQLELSKISVEHEDLRASFSKKESELES 130

Human   131 AQIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAAKKQLADETLLKVDLE 195
            ||.:.||.||.||||:|||||...:.|||:|::||||.:|.|||::||.|||||.:|.|:|||||
 Frog   131 AQARFRETEALLNSKNAALATTQSENKSLQGEVEDLKAEIGQLESALALAKKQLEEEILIKVDLE 195

Human   196 NRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLY 260
            ||||||.|:|:|||::|||||.||||:|||||||||||:|||||:||:|||.:||||||:||.||
 Frog   196 NRCQSLIEELDFRKNVYEEEIKETRRRHETRLVEVDSGKQIEYEHKLSQALADMREQHDSQVTLY 260

Human   261 KEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELE 325
            |||||.||.:||||||||||||:|.|||.||||||||.||:||:||||.|||||||..:|:||||
 Frog   261 KEELEHTYQSKLENARLSSEMNSSAVNSTREELMESRYRIDSLTSQLSELQKESRAWHDRMQELE 325

Human   326 DLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL 390
            |:|||||||||:||.::|||||:||||||||||||||||||||||||||||||||||||||||||
 Frog   326 DMLAKEKDNSRKMLAEREREMADIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL 390

Human   391 SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVDGKFIR 455
            ||||.||||||||||||||||.:|||||:|||||||||||||||||||||:|.|||:|||||:||
 Frog   391 SPSPPSRVTVSRASSSRSVRTAKGKRKRIDVEESEASSSVSISHSASATGDVSIEEVDVDGKYIR 455

Human   456 LKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNS 520
            |||.||||.|:||||:.|.||:.||::|:|||||||||||||||||:||||||||:|||||||||
 Frog   456 LKNNSEQDHPLGGWELTRTIGEASVNFKFTSRYVLKAGQTVTIWAADAGVTASPPSDLIWKNQNS 520

Human   521 WGTGEDVKVILKNSQGEEVAQRSTVFKTTIPEEE-EEEEEAAGVVVEEELFHQQGTPRASNRSCA 584
            |.|||||||||||||||:||||:||:.||||||| |||||....:.:|..:.||   ::.||:||
 Frog   521 WATGEDVKVILKNSQGEDVAQRTTVYTTTIPEEELEEEEEMLEEITKESHYSQQ---KSGNRNCA 582

Human   585 IM 586
            ||
 Frog   583 IM 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMNB1NP_005564.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 18/29 (62%)
Head 2..34 20/31 (65%)
Filament 31..387 CDD:278467 268/355 (75%)
Coil 1A 35..69 27/33 (82%)
Linker 1 70..81 6/10 (60%)
Coil 1B 82..215 86/132 (65%)
Linker 2 216..243 22/26 (85%)
Coil 2 244..386 117/141 (83%)
Tail 387..586 154/199 (77%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 388..432 39/43 (91%)
Nuclear localization signal. /evidence=ECO:0000255 415..420 4/4 (100%)
LTD 439..543 CDD:279300 84/103 (82%)
lmnb1NP_989198.1 Filament 31..387 CDD:365827 268/355 (75%)
LTD 439..543 CDD:376421 84/103 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 527 1.000 Domainoid score I3313
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55912
Inparanoid 1 1.050 817 1.000 Inparanoid score I4289
NCBI 1 1.000 - -
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D125047at32523
OrthoFinder 1 1.000 - - FOG0001052
OrthoInspector 1 1.000 - - oto154509
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R8297
SonicParanoid 1 1.000 - - X632
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.090

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