Sequence 1: | NP_005564.1 | Gene: | LMNB1 / 4001 | HGNCID: | 6637 | Length: | 586 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_989198.1 | Gene: | lmnb1 / 394806 | XenbaseID: | XB-GENE-489658 | Length: | 584 | Species: | Xenopus tropicalis |
Alignment Length: | 587 | Identity: | 444/587 - (75%) |
---|---|---|---|
Similarity: | 514/587 - (87%) | Gaps: | 4/587 - (0%) |
- Green bases have known domain annotations that are detailed below.
Human 1 MATATPVPPRMGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVT 65
Human 66 EREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLNYAKKESDLNG 130
Human 131 AQIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAAKKQLADETLLKVDLE 195
Human 196 NRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLY 260
Human 261 KEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELE 325
Human 326 DLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL 390
Human 391 SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVDGKFIR 455
Human 456 LKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNS 520
Human 521 WGTGEDVKVILKNSQGEEVAQRSTVFKTTIPEEE-EEEEEAAGVVVEEELFHQQGTPRASNRSCA 584
Human 585 IM 586 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LMNB1 | NP_005564.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..31 | 18/29 (62%) | |
Head | 2..34 | 20/31 (65%) | |||
Filament | 31..387 | CDD:278467 | 268/355 (75%) | ||
Coil 1A | 35..69 | 27/33 (82%) | |||
Linker 1 | 70..81 | 6/10 (60%) | |||
Coil 1B | 82..215 | 86/132 (65%) | |||
Linker 2 | 216..243 | 22/26 (85%) | |||
Coil 2 | 244..386 | 117/141 (83%) | |||
Tail | 387..586 | 154/199 (77%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 388..432 | 39/43 (91%) | |||
Nuclear localization signal. /evidence=ECO:0000255 | 415..420 | 4/4 (100%) | |||
LTD | 439..543 | CDD:279300 | 84/103 (82%) | ||
lmnb1 | NP_989198.1 | Filament | 31..387 | CDD:365827 | 268/355 (75%) |
LTD | 439..543 | CDD:376421 | 84/103 (82%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 527 | 1.000 | Domainoid score | I3313 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H55912 | |
Inparanoid | 1 | 1.050 | 817 | 1.000 | Inparanoid score | I4289 |
NCBI | 1 | 1.000 | - | - | ||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D125047at32523 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001052 | |
OrthoInspector | 1 | 1.000 | - | - | oto154509 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R8297 |
SonicParanoid | 1 | 1.000 | - | - | X632 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
10 | 10.090 |