DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMNB1 and LamC

DIOPT Version :9

Sequence 1:NP_005564.1 Gene:LMNB1 / 4001 HGNCID:6637 Length:586 Species:Homo sapiens
Sequence 2:NP_001260974.1 Gene:LamC / 36615 FlyBaseID:FBgn0010397 Length:640 Species:Drosophila melanogaster


Alignment Length:562 Identity:207/562 - (36%)
Similarity:326/562 - (58%) Gaps:30/562 - (5%)


- Green bases have known domain annotations that are detailed below.


Human     2 ATATPVPPRMGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVTE 66
            :|:|||.....|...|.|:|.||||.||.||||||:.||||||.|||::|:||.|||.|..::..
  Fly    16 STSTPVGGASTSSRVGATSPTSPTRTSRQQEKEELQHLNDRLACYIDRMRNLENENSRLTQELNL 80

Human    67 REEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLNYAKKESDLNGA 131
            .::...||.:.|||:||.|||.||:.||:||:|:|||:|::.:...|:|.|.....||..:...|
  Fly    81 AQDTVNRETSNLKAVYEKELAAARKLLDETAKEKAKLEIDIKRLWEENDDLKPRLDKKTKEATVA 145

Human   132 QIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAAKKQLADETLLKVDLEN 196
            :...|.||...|..:.....:|.|:|..|...::|..:..:|...|...:|||..|||.:|||||
  Fly   146 ENNARLYENRYNEVNGKYNQSLADRKKFEDQAKELALENERLRRQLDDLRKQLEAETLARVDLEN 210

Human   197 RCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLYK 261
            :.|||.|:|.|:..::.:|:.|||.:.:..:.|:|.....:||.||.|:|.|:|:|::.|:|:.:
  Fly   211 QNQSLREELAFKDQVHTQELTETRSRRQIEISEIDGRLSRQYEAKLQQSLQELRDQYEGQMRINR 275

Human   262 EELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELED 326
            ||:|..|..:::|.:.::.........|.||:...|.:|:.|:::|.||:..:.....||:|||:
  Fly   276 EEIELLYDNEIQNLKAAANRAAQGSALATEEVRLMRTKIDGLNAKLQNLEDTNAGLNARIRELEN 340

Human   327 LLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL- 390
            ||..|:....:.:...|.|:..:||:|..||.:|:.|:|:|::||:||:||.|||.|||.||.: 
  Fly   341 LLDTERQRHNQYIASLEAELQRMRDEMAHQLQEYQGLMDIKVSLDLEIAAYDKLLCGEERRLNIE 405

Human   391 SP----------SPSSRVTVSRASSSRSVRTTRG---------------KRKRVDVEESEASSSV 430
            ||          |..|.:|.|  :||||.|.|..               ||:|..::|||..:..
  Fly   406 SPGRPTTDSGISSNGSHLTAS--ASSRSGRVTPSGRRSATPGISGSSAVKRRRTVIDESEDRTLS 468

Human   431 SISHSASATGNVCIEEIDVDGKFIRLKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQT 495
            ..|.:|:|.|::.|.|.||:|:||:|.|...::..:.||::.|..||..:::|::....:..|.:
  Fly   469 EYSVNAAAKGDLEIIEADVEGRFIKLHNKGTEEINLTGWQLTRIAGDEELAFKFSRGSKVLGGAS 533

Human   496 VTIWAANAGVTASPPTDLIWKNQNSWGTGEDVKVILKNSQGE 537
            ||||:.:||....||.:|:.|.:  |.....::.:|.|:..|
  Fly   534 VTIWSVDAGTAHDPPNNLVMKKK--WPVANSMRSVLANADKE 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMNB1NP_005564.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 14/28 (50%)
Head 2..34 16/31 (52%)
Filament 31..387 CDD:278467 139/355 (39%)
Coil 1A 35..69 18/33 (55%)
Linker 1 70..81 4/10 (40%)
Coil 1B 82..215 50/132 (38%)
Linker 2 216..243 8/26 (31%)
Coil 2 244..386 51/141 (36%)
Tail 387..586 54/177 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 388..432 19/69 (28%)
Nuclear localization signal. /evidence=ECO:0000255 415..420 3/4 (75%)
LTD 439..543 CDD:279300 31/99 (31%)
LamCNP_001260974.1 Filament 45..401 CDD:278467 139/355 (39%)
ATP-synt_B <67..>142 CDD:304375 32/74 (43%)
MreC <178..>224 CDD:302802 20/45 (44%)
LTD 473..574 CDD:279300 33/103 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 270 1.000 Domainoid score I1835
eggNOG 1 0.900 - - E1_KOG0977
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 398 1.000 Inparanoid score I1952
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48052
OrthoDB 1 1.010 - - D204815at33208
OrthoFinder 1 1.000 - - FOG0001052
OrthoInspector 1 1.000 - - mtm8670
orthoMCL 1 0.900 - - OOG6_103212
Panther 1 1.100 - - O PTHR45721
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X632
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.840

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