Sequence 1: | NP_005564.1 | Gene: | LMNB1 / 4001 | HGNCID: | 6637 | Length: | 586 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_446357.2 | Gene: | Lmnb1 / 116685 | RGDID: | 620522 | Length: | 587 | Species: | Rattus norvegicus |
Alignment Length: | 587 | Identity: | 565/587 - (96%) |
---|---|---|---|
Similarity: | 575/587 - (97%) | Gaps: | 1/587 - (0%) |
- Green bases have known domain annotations that are detailed below.
Human 1 MATATPVPPRMGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVT 65
Human 66 EREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLNYAKKESDLNG 130
Human 131 AQIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAAKKQLADETLLKVDLE 195
Human 196 NRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLY 260
Human 261 KEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELE 325
Human 326 DLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL 390
Human 391 SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVDGKFIR 455
Human 456 LKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNS 520
Human 521 WGTGEDVKVILKNSQGEEVAQRSTVFKTTIP-EEEEEEEEAAGVVVEEELFHQQGTPRASNRSCA 584
Human 585 IM 586 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LMNB1 | NP_005564.1 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..31 | 23/29 (79%) | |
Head | 2..34 | 25/31 (81%) | |||
Filament | 31..387 | CDD:278467 | 348/355 (98%) | ||
Coil 1A | 35..69 | 33/33 (100%) | |||
Linker 1 | 70..81 | 10/10 (100%) | |||
Coil 1B | 82..215 | 128/132 (97%) | |||
Linker 2 | 216..243 | 26/26 (100%) | |||
Coil 2 | 244..386 | 138/141 (98%) | |||
Tail | 387..586 | 190/199 (95%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 388..432 | 43/43 (100%) | |||
Nuclear localization signal. /evidence=ECO:0000255 | 415..420 | 4/4 (100%) | |||
LTD | 439..543 | CDD:279300 | 101/103 (98%) | ||
Lmnb1 | NP_446357.2 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 1..29 | 21/27 (78%) | |
Head | 2..34 | 25/31 (81%) | |||
Filament | 31..387 | CDD:365827 | 348/355 (98%) | ||
Coil 1A | 35..69 | 33/33 (100%) | |||
Linker 1 | 70..81 | 10/10 (100%) | |||
Coil 1B | 82..215 | 128/132 (97%) | |||
Linker 2 | 216..243 | 26/26 (100%) | |||
Coil 2 | 244..386 | 138/141 (98%) | |||
Tail | 387..587 | 190/199 (95%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 390..432 | 41/41 (100%) | |||
Nuclear localization signal. /evidence=ECO:0000255 | 415..420 | 4/4 (100%) | |||
LTD | 439..542 | CDD:395746 | 100/102 (98%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 550..587 | 29/36 (81%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C83693635 | |
Domainoid | 1 | 1.000 | 659 | 1.000 | Domainoid score | I4026 |
eggNOG | 1 | 0.900 | - | - | E1_KOG0977 | |
HGNC | 1 | 1.500 | - | - | ||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H55912 | |
Inparanoid | 1 | 1.050 | 1073 | 1.000 | Inparanoid score | I4889 |
NCBI | 1 | 1.000 | - | - | ||
OMA | 1 | 1.010 | - | - | QHG48052 | |
OrthoDB | 1 | 1.010 | - | - | D125047at32523 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0001052 | |
OrthoInspector | 1 | 1.000 | - | - | oto137536 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_103212 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR45721 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 1 | 1.000 | - | - | X632 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 1 | 0.960 | - | - | ||
18 | 18.270 |