DRSC/TRiP Functional Genomics Resources

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Protein Alignment LMNB1 and Lmnb1

DIOPT Version :9

Sequence 1:NP_005564.1 Gene:LMNB1 / 4001 HGNCID:6637 Length:586 Species:Homo sapiens
Sequence 2:NP_446357.2 Gene:Lmnb1 / 116685 RGDID:620522 Length:587 Species:Rattus norvegicus


Alignment Length:587 Identity:565/587 - (96%)
Similarity:575/587 - (97%) Gaps:1/587 - (0%)


- Green bases have known domain annotations that are detailed below.


Human     1 MATATPVPPRMGSRAGGPTTPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVT 65
            |||||||..|.||||..|.||||||||||||||||||||||||||||||||||||||||||||||
  Rat     1 MATATPVQQRAGSRASAPATPLSPTRLSRLQEKEELRELNDRLAVYIDKVRSLETENSALQLQVT 65

Human    66 EREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKCKAEHDQLLLNYAKKESDLNG 130
            ||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||:|
  Rat    66 EREEVRGRELTGLKALYETELADARRALDDTARERAKLQIELGKFKAEHDQLLLNYAKKESDLSG 130

Human   131 AQIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLAAAKKQLADETLLKVDLE 195
            |||||||||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||
  Rat   131 AQIKLREYEAALNSKDAALATALGDKKSLEGDLEDLKDQIAQLEASLSAAKKQLADETLLKVDLE 195

Human   196 NRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLY 260
            ||||||||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   196 NRCQSLTEDLEFRKNMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQHDAQVRLY 260

Human   261 KEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELE 325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   261 KEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLSSQLSNLQKESRACLERIQELE 325

Human   326 DLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL 390
            |:||||:|||||||:||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   326 DMLAKERDNSRRMLSDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLEGEEERLKL 390

Human   391 SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVDGKFIR 455
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Rat   391 SPSPSSRVTVSRASSSRSVRTTRGKRKRVDVEESEASSSVSISHSASATGNVCIEEIDVDGKFIR 455

Human   456 LKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTIWAANAGVTASPPTDLIWKNQNS 520
            ||||||||||||||||||||||||||||||||||||||||||:||||||||||||||||||||||
  Rat   456 LKNTSEQDQPMGGWEMIRKIGDTSVSYKYTSRYVLKAGQTVTVWAANAGVTASPPTDLIWKNQNS 520

Human   521 WGTGEDVKVILKNSQGEEVAQRSTVFKTTIP-EEEEEEEEAAGVVVEEELFHQQGTPRASNRSCA 584
            |||||||||:||||||||||||||||||||| ||||||||..||.:|||.|||||||||||:|||
  Rat   521 WGTGEDVKVVLKNSQGEEVAQRSTVFKTTIPEEEEEEEEEPIGVAIEEERFHQQGTPRASNKSCA 585

Human   585 IM 586
            ||
  Rat   586 IM 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LMNB1NP_005564.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 23/29 (79%)
Head 2..34 25/31 (81%)
Filament 31..387 CDD:278467 348/355 (98%)
Coil 1A 35..69 33/33 (100%)
Linker 1 70..81 10/10 (100%)
Coil 1B 82..215 128/132 (97%)
Linker 2 216..243 26/26 (100%)
Coil 2 244..386 138/141 (98%)
Tail 387..586 190/199 (95%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 388..432 43/43 (100%)
Nuclear localization signal. /evidence=ECO:0000255 415..420 4/4 (100%)
LTD 439..543 CDD:279300 101/103 (98%)
Lmnb1NP_446357.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..29 21/27 (78%)
Head 2..34 25/31 (81%)
Filament 31..387 CDD:365827 348/355 (98%)
Coil 1A 35..69 33/33 (100%)
Linker 1 70..81 10/10 (100%)
Coil 1B 82..215 128/132 (97%)
Linker 2 216..243 26/26 (100%)
Coil 2 244..386 138/141 (98%)
Tail 387..587 190/199 (95%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 390..432 41/41 (100%)
Nuclear localization signal. /evidence=ECO:0000255 415..420 4/4 (100%)
LTD 439..542 CDD:395746 100/102 (98%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 550..587 29/36 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C83693635
Domainoid 1 1.000 659 1.000 Domainoid score I4026
eggNOG 1 0.900 - - E1_KOG0977
HGNC 1 1.500 - -
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55912
Inparanoid 1 1.050 1073 1.000 Inparanoid score I4889
NCBI 1 1.000 - -
OMA 1 1.010 - - QHG48052
OrthoDB 1 1.010 - - D125047at32523
OrthoFinder 1 1.000 - - FOG0001052
OrthoInspector 1 1.000 - - oto137536
orthoMCL 1 0.900 - - OOG6_103212
Panther 1 1.100 - - LDO PTHR45721
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X632
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1818.270

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