DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpIIIC53 and RPC53

DIOPT Version :9

Sequence 1:NP_649028.3 Gene:RpIIIC53 / 40002 FlyBaseID:FBgn0036775 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_010131.1 Gene:RPC53 / 851404 SGDID:S000002309 Length:422 Species:Saccharomyces cerevisiae


Alignment Length:430 Identity:90/430 - (20%)
Similarity:162/430 - (37%) Gaps:92/430 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 GMTRLTPARDLTLGGRGAGTASKKVFAPNLNAVRNKNANVKTSKDTTQPRSGRRGGR----GNGT 101
            |..||...:|.:..|.|:...|.| |.|...|.::|......:.........:||..    .|..
Yeast     6 GNGRLPSLKDSSSNGGGSAKPSLK-FKPKAVARKSKEEREAAASKVKLEEESKRGNDKKHFNNKN 69

  Fly   102 GATRGRGGNS---AGGGNSTLIQTQGLFSEG-----AGDVHVRR----STGNGTAYARGGEE--- 151
            ....|.||..   |...|:|.:.:.|..:.|     .||  :||    |.|:|::..:.|.|   
Yeast    70 KRVTGAGGQQRRMAKYLNNTHVISSGPLAAGNFVSEKGD--LRRGFIKSEGSGSSLVQKGLETID 132

  Fly   152 --VSVTRKRVDRKDDKSQAERIKELL-----------------GESDASGG-ELSEEE--ANKTE 194
              ...:....:..|::..|.:.|:..                 |||:.|.. ::.:||  :.:.|
Yeast   133 NGAESSENEAEDDDNEGVASKSKKKFNMGKEFEARNLIEDEDDGESEKSSDVDMDDEEWRSKRIE 197

  Fly   195 --MALRPILLKEGLWVTQKTPIAKQEIASSTSTLKDT---------------------------- 229
              ..:||:.::.....|.|..|  ||..|...|.:.|                            
Yeast   198 QLFPVRPVRVRHEDVETVKREI--QEALSEKPTREPTPSVKTEPVGTGLQSYLEERERQVNEKLA 260

  Fly   230 -LAVAQHLQQLHVAAQAASLEEPPLQYGRYPRTIGNFLDSSEAQIFLMQLPDVLPCVGDDSEDPE 293
             |.:.:..|.:.....||.||.....:....|.:.. :::...:..:.|||..||..      ..
Yeast   261 DLGLEKEFQSVDGKEAAAELELLNADHQHILRKLKK-MNNKPERFMVFQLPTRLPAF------ER 318

  Fly   294 PSKGDHQATSESEPASPADKCSNGPKGSV-----LRQLEEGQIGKILRYKSGRVKLQLGDTRFDL 353
            |:..:.:...|::.:.|:.|..|..|...     .|:| .|::|.|..:|||::.:::|:...|:
Yeast   319 PAVKEEKEDMETQASDPSKKKKNIKKKDTKDALSTREL-AGKVGSIRVHKSGKLSVKIGNVVMDI 382

  Fly   354 DMGLDPGFLQELMSVTANREQRSGNMINLGPIQAKLKATP 393
            ..|.:..|||::::::...:..|..:  ||.:..|:..||
Yeast   383 GKGAETTFLQDVIALSIADDASSAEL--LGRVDGKIVVTP 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpIIIC53NP_649028.3 RNA_pol_Rpc4 272..395 CDD:282926 31/127 (24%)
RPC53NP_010131.1 RNA_pol_Rpc4 301..420 CDD:398686 29/127 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346338
Domainoid 1 1.000 45 1.000 Domainoid score I3102
eggNOG 1 0.900 - - E1_KOG3122
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 47 1.000 Inparanoid score I1871
Isobase 1 0.950 - 0 Normalized mean entropy S5286
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003960
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR13408
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1192
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
109.870

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